Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1627.1 814 100.0
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1532.7 815 94.6
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 0.0e+00 1525.0 814 94.3
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 0.0e+00 1368.6 838 82.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 0.0e+00 1353.2 838 81.9
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 0.0e+00 1351.7 839 82.2
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 0.0e+00 1344.7 838 81.5
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 0.0e+00 1339.3 838 81.4
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1335.1 832 81.7
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 0.0e+00 1330.9 832 81.5
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1328.9 840 80.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 0.0e+00 1328.9 840 80.7
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 0.0e+00 1310.8 839 79.7
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 0.0e+00 1277.7 844 78.0
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 0.0e+00 1157.9 844 70.3
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 5.0e-271 937.9 851 58.5
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 4.9e-258 894.8 852 55.8
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 4.7e-253 878.2 822 54.0
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.8e-252 876.3 840 53.9
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 6.8e-252 874.4 805 56.3
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 6.8e-252 874.4 823 55.9
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 3.4e-251 872.1 853 54.5
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 7.1e-249 864.4 820 55.0
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 5.1e-247 858.2 827 54.1
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.7e-245 851.7 870 53.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 4.7e-245 851.7 817 53.9
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.1e-244 850.5 847 52.9
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.6e-243 844.3 857 52.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.7e-242 843.2 840 51.8
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.9e-241 839.7 845 52.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.9e-241 839.7 741 59.1
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.0e-240 834.7 853 52.4
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.7e-239 833.2 862 52.0
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.1e-238 830.5 836 51.9
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.1e-238 830.5 853 52.2
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.1e-237 826.2 860 52.0
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 6.2e-237 824.7 852 51.2
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.1e-236 823.9 771 55.4
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.4e-236 823.5 822 51.0
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 9.0e-236 820.8 847 51.9
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.2e-235 820.5 864 51.2
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.0e-235 819.7 834 51.6
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 4.5e-235 818.5 831 52.1
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 9.9e-235 817.4 894 50.4
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 2.9e-234 815.8 836 51.8
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 4.9e-234 815.1 848 50.7
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 6.4e-234 814.7 849 50.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.1e-233 813.9 844 51.5
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.4e-233 812.8 839 51.4
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.6e-232 810.1 835 51.7
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 4.6e-232 808.5 840 51.5
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 6.0e-232 808.1 848 50.4
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 6.6e-231 804.7 819 50.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.3e-230 802.4 854 50.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 7.4e-230 801.2 811 53.1
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.6e-229 798.9 857 50.1
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.6e-229 798.9 803 51.1
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 3.1e-228 795.8 811 50.3
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.5e-227 793.5 851 49.4
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.0e-227 793.1 778 53.1
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 2.0e-227 793.1 808 51.2
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 4.5e-227 792.0 870 50.2
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 5.8e-227 791.6 848 49.1
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.6e-227 791.2 862 50.6
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 7.6e-227 791.2 854 50.6
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.9e-227 790.8 863 50.6
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.7e-226 790.0 836 49.9
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 6.4e-226 788.1 819 50.1
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.4e-225 786.9 849 49.5
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-225 786.6 856 50.1
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.2e-224 783.9 779 53.0
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 3.9e-223 778.9 760 52.6
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.1e-223 778.5 810 51.6
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.7e-223 777.7 892 48.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.5e-222 776.9 772 51.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 5.6e-222 775.0 842 50.0
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 7.4e-222 774.6 863 48.9
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.6e-221 773.5 862 49.7
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.0e-220 768.8 864 49.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 6.9e-220 768.1 846 48.2
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.5e-219 766.9 845 49.3
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.0e-218 764.2 805 49.9
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.2e-218 763.1 772 51.8
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.8e-218 762.3 738 53.7
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 1.1e-217 760.8 823 49.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.1e-217 760.8 805 50.3
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.7e-216 756.1 682 57.0
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.3e-215 753.8 827 48.7
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 9.6e-214 747.7 794 49.9
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.8e-212 743.4 861 48.1
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.0e-211 740.0 814 47.8
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.6e-211 739.6 863 48.6
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.5e-211 738.8 857 46.7
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 3.8e-210 735.7 856 48.1
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.0e-210 735.3 777 50.6
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 6.5e-210 734.9 823 47.1
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.4e-209 733.8 859 46.2
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.3e-207 727.2 849 47.3
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.3e-207 727.2 810 48.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.4e-203 712.6 759 49.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 5.9e-203 711.8 805 48.0
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 2.9e-202 709.5 753 52.1
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.3e-197 694.1 717 51.6
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 8.2e-197 691.4 750 49.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.6e-192 677.2 861 45.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.0e-190 670.2 778 48.5
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 6.5e-186 655.2 844 43.0
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 3.3e-182 642.9 705 48.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 5.7e-182 642.1 869 41.4
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.5e-179 632.9 670 48.7
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.0e-175 619.8 876 40.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.2e-170 603.6 760 43.6
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.5e-169 600.1 682 48.2
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.0e-167 594.7 521 57.6
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 2.3e-167 593.6 872 41.1
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 9.8e-166 588.2 977 38.2
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.9e-165 585.9 713 47.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.9e-161 573.9 842 40.0
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 8.0e-160 568.5 815 40.5
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.2e-155 554.7 670 47.2
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 6.6e-154 548.9 682 44.3
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 3.6e-152 543.1 612 49.0
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.9e-148 530.8 677 43.9
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.2e-131 474.9 726 39.7
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 4.3e-129 466.5 529 46.9
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 4.0e-127 459.9 392 60.2
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.6e-123 448.0 343 62.1
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.6e-123 446.4 348 63.2
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.1e-112 411.0 696 36.6
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 5.1e-106 389.8 459 45.5
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.3e-98 365.2 318 56.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.0e-94 351.3 459 43.4
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.7e-88 330.5 777 29.9
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 2.2e-85 321.2 623 35.3
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.0e-82 312.4 925 27.4
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 6.5e-77 293.1 397 42.6
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 5.3e-71 273.5 397 40.8
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.3e-69 268.9 450 36.4
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 5.2e-66 256.9 306 43.5
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 5.7e-65 253.4 352 39.2
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.0e-58 231.1 313 42.8
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 5.9e-54 216.9 385 34.3
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-51 209.1 202 54.0
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 7.8e-46 189.9 180 56.1
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.4e-41 174.5 177 52.5
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.2e-27 129.4 117 45.3
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.4e-25 120.9 143 44.8
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.0e-22 110.5 110 51.8
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 5.2e-18 97.4 88 60.2
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.7e-13 82.4 143 32.2
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 4.0e-10 71.2 56 53.6
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 6.9e-10 70.5 79 46.8
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 6.9e-10 70.5 95 41.1
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 3.4e-09 68.2 48 56.2
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 9.9e-09 66.6 59 54.2
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 8.4e-08 63.5 66 40.9
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-06 59.7 47 51.1
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.1e-06 58.9 54 51.9


User provided reference genes

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