Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 6.9e-290 1000.0 519 100.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.7e-238 827.8 432 99.8
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 4.0e-221 771.5 411 97.3
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-220 770.0 411 97.3
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-205 719.9 415 92.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.2e-194 682.2 448 81.7
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.3e-192 676.0 414 86.2
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.5e-185 652.1 415 83.6
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.9e-184 648.7 413 83.3
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 6.6e-184 647.9 415 83.4
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.6e-172 607.8 413 78.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 9.3e-170 600.9 414 75.8
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-164 583.9 413 75.1
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.0e-164 583.2 409 74.8
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-163 580.5 423 72.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.7e-163 580.1 414 75.4
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.9e-163 578.6 412 74.5
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.9e-163 578.6 412 74.5
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-162 576.6 423 72.1
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 7.1e-162 574.7 410 73.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.6e-161 573.5 414 73.9
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-159 566.2 413 73.4
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.5e-159 566.2 413 73.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.3e-158 563.9 357 83.5
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-157 560.8 411 72.5
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.4e-157 559.7 410 72.7
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.0e-156 556.6 410 72.4
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.8e-149 533.5 410 70.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.9e-146 523.5 381 72.7
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.3e-143 512.7 414 65.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.4e-141 506.5 409 64.8
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 3.1e-141 506.1 411 65.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-140 504.2 408 65.0
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.5e-140 503.8 411 64.0
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.2e-139 500.0 409 63.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 3.8e-139 499.2 404 63.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 6.5e-139 498.4 418 64.6
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 8.5e-139 498.0 404 63.9
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.4e-138 497.3 419 61.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.2e-138 496.1 417 63.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 4.2e-138 495.7 408 64.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-138 495.0 414 64.3
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 9.4e-138 494.6 407 64.4
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.7e-137 493.0 407 63.9
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 3.6e-137 492.7 387 65.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.7e-137 492.3 417 63.5
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 6.1e-137 491.9 407 63.9
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.4e-136 490.7 403 63.8
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.4e-136 490.7 408 63.5
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.8e-136 490.3 407 64.1
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.3e-136 490.0 403 63.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.0e-136 489.6 418 63.6
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 6.7e-136 488.4 414 64.0
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.7e-136 488.4 409 62.1
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 8.8e-136 488.0 403 64.0
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 3.3e-135 486.1 404 62.6
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.4e-135 485.7 406 63.3
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 3.7e-134 482.6 403 63.8
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 3.7e-134 482.6 382 64.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 6.3e-134 481.9 413 60.5
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.1e-133 481.1 373 66.2
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.1e-133 481.1 410 60.7
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.8e-133 480.3 409 64.1
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 9.1e-133 478.0 350 68.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.2e-132 477.6 371 66.0
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.2e-132 477.6 401 62.3
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.6e-132 477.2 407 60.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.6e-132 476.5 353 67.7
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 5.9e-132 475.3 405 62.7
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.2e-131 473.4 368 65.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.5e-131 471.9 400 61.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 8.5e-131 471.5 331 73.4
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.5e-130 470.7 409 60.4
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 5.5e-130 468.8 379 65.4
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.7e-129 466.5 368 62.0
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.7e-129 466.5 410 61.5
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.7e-129 466.5 409 60.9
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.6e-129 466.1 412 60.9
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 8.0e-129 464.9 350 66.9
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 8.0e-129 464.9 444 55.6
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-128 464.2 405 61.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 5.2e-128 462.2 350 65.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 6.7e-128 461.8 383 62.4
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.0e-127 460.3 382 62.3
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.0e-127 460.3 332 69.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-127 459.9 369 64.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-127 459.9 411 60.3
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.4e-127 459.1 410 60.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 7.5e-127 458.4 351 62.4
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.5e-127 458.4 409 59.7
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 9.7e-127 458.0 411 60.1
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.3e-126 457.6 472 53.8
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.8e-126 455.7 392 59.4
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.3e-126 455.3 411 60.1
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 6.3e-126 455.3 392 59.7
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.4e-125 454.1 417 57.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.8e-125 453.8 405 57.5
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.1e-125 453.0 431 56.1
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 3.1e-125 453.0 351 65.0
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.6e-124 450.7 431 56.1
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.7e-124 449.9 396 60.6
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.7e-123 447.2 413 57.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 6.5e-123 445.3 407 57.2
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.2e-122 441.8 331 68.0
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 3.6e-121 439.5 350 61.7
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 6.8e-120 435.3 404 57.7
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 6.8e-120 435.3 336 64.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 4.4e-119 432.6 336 64.3
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.3e-118 431.0 367 60.2
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.9e-114 417.2 327 66.1
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 9.8e-111 404.8 387 56.3
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 7.0e-109 398.7 307 64.8
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.5e-108 396.0 358 57.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.2e-105 387.9 292 68.5
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.6e-105 386.3 408 52.9
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.7e-102 376.3 341 57.5
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.4e-101 374.4 306 69.3
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-100 371.3 205 95.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.7e-100 370.2 336 54.8
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.9e-99 366.3 346 54.0
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-96 355.9 313 55.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.6e-95 353.6 341 52.8
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 8.3e-94 348.6 401 50.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.7e-92 343.6 319 53.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 7.3e-90 335.5 410 48.0
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.0e-83 315.1 290 60.0
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.2e-79 301.6 435 44.1
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.4e-77 293.9 230 70.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.5e-74 284.6 397 40.6
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.2e-73 281.6 336 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.9e-72 275.4 371 40.4
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.3e-70 271.6 315 44.8
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-66 256.5 337 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.4e-64 250.8 295 43.4
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.8e-62 243.4 328 39.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-62 243.4 310 40.0
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-61 240.7 309 39.2
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.2e-61 240.0 301 41.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.4e-61 239.6 300 42.0
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-60 238.0 307 39.4
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.4e-58 229.2 274 42.0
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.6e-58 228.8 225 57.3
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.0e-56 223.4 181 61.3
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.4e-55 220.3 255 51.0
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 8.4e-54 215.7 157 70.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.8e-51 208.0 338 36.1
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 8.2e-49 199.1 114 90.4
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.6e-47 194.1 152 57.9
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 4.6e-44 183.3 237 43.5
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.3e-42 177.2 325 33.5
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.7e-42 176.4 352 32.4
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.6e-42 175.6 161 59.0
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.1e-40 170.6 348 31.9
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.1e-40 170.2 329 31.9
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-40 169.9 367 31.9
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.6e-39 166.0 124 71.8
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-37 161.4 313 30.0
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.9e-37 161.4 146 55.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.5e-31 140.2 322 29.2
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.9e-30 137.5 302 33.1
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.7e-27 126.3 191 36.1
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.4e-26 123.6 314 29.6
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.2e-25 121.3 306 31.0
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.8e-25 120.2 301 27.2
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-24 118.6 299 27.8
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 5.3e-24 116.7 83 72.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-23 115.2 316 28.8
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-23 115.2 319 28.5
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.2e-22 111.3 77 74.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-21 108.6 221 31.7
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-21 107.8 150 40.0
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.2e-21 107.5 142 45.1
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.3e-18 97.4 313 26.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 4.4e-18 97.1 356 27.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 7.7e-15 86.3 301 25.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 4.7e-12 77.0 64 60.9
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.5e-10 69.7 89 46.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-09 68.9 149 32.9


User provided reference genes

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