Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 8.8e-246 853.2 440 100.0
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.8e-244 848.2 440 99.5
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 2.5e-232 808.5 443 95.3
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 7.0e-227 790.4 444 93.7
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 7.0e-227 790.4 444 93.7
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 6.6e-217 757.3 449 87.8
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.5e-216 756.1 448 87.5
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-213 746.1 448 86.2
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 2.4e-211 738.8 448 85.5
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.7e-209 732.6 449 85.5
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 3.0e-209 731.9 442 86.9
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 5.1e-209 731.1 450 84.9
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 4.3e-208 728.0 442 86.4
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.1e-207 725.7 450 85.1
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 6.8e-206 720.7 441 85.9
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.9e-200 702.6 446 83.9
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.2e-199 699.9 441 84.1
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.5e-189 666.4 419 82.1
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.1e-182 643.7 450 74.0
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.6e-170 603.2 362 87.8
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 5.9e-157 558.1 459 63.2
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.2e-155 552.0 450 63.3
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 2.3e-153 546.2 444 61.9
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 8.8e-153 544.3 449 64.1
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.5e-152 542.7 440 63.6
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 4.8e-151 538.5 448 63.8
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 6.3e-151 538.1 448 64.1
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.2e-149 533.9 448 62.7
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 5.9e-149 531.6 457 61.9
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.0e-148 530.8 454 61.5
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.3e-148 530.4 446 60.8
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.3e-148 530.4 453 62.5
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 2.2e-148 529.6 472 60.6
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.1e-147 527.3 465 61.3
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 9.4e-147 524.2 445 62.2
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.2e-146 523.9 450 62.7
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.6e-146 523.5 453 62.5
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 2.7e-146 522.7 448 60.0
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 4.7e-146 521.9 441 62.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 4.7e-146 521.9 459 59.9
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.0e-145 520.8 437 60.0
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.4e-145 520.4 427 63.9
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.8e-145 520.0 435 62.1
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.8e-145 520.0 447 63.1
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 2.3e-145 519.6 449 61.7
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 4.4e-144 515.4 432 60.2
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.7e-143 513.5 432 60.2
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.2e-143 513.1 459 59.7
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.2e-143 513.1 439 61.7
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.8e-143 512.7 475 59.2
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 3.7e-143 512.3 447 60.2
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 3.7e-143 512.3 432 61.3
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 4.8e-143 511.9 428 61.0
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.2e-143 511.1 449 60.8
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 8.2e-143 511.1 448 60.5
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.4e-142 510.4 451 60.3
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.8e-142 510.0 450 59.8
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 1.8e-142 510.0 435 60.0
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.8e-142 510.0 448 60.9
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.4e-142 509.6 494 57.1
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 2.4e-142 509.6 446 59.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 9.1e-142 507.7 443 59.4
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.2e-141 507.3 438 60.0
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.5e-141 506.9 464 60.1
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 2.0e-141 506.5 454 60.4
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 4.5e-141 505.4 436 60.6
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 4.5e-141 505.4 440 59.8
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.0e-140 504.2 448 59.6
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 3.8e-140 502.3 454 59.9
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 6.5e-140 501.5 457 61.1
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.5e-139 499.6 457 58.4
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 3.2e-139 499.2 455 58.5
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 4.2e-139 498.8 455 60.0
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.2e-138 497.3 450 60.2
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.7e-138 496.1 433 60.3
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 4.7e-138 495.4 459 59.7
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 8.0e-138 494.6 515 53.4
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.0e-137 492.7 490 55.3
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 6.7e-137 491.5 469 58.6
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 8.8e-137 491.1 441 59.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.1e-136 490.7 469 58.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.5e-136 490.3 412 62.9
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.7e-135 486.9 433 58.2
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 6.3e-135 485.0 434 58.8
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.1e-134 484.2 429 58.5
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.3e-132 477.2 443 56.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 3.8e-132 475.7 448 57.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 3.2e-131 472.6 458 57.4
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 9.4e-131 471.1 456 57.5
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 1.6e-130 470.3 435 55.9
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 8.0e-130 468.0 405 60.2
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 8.0e-130 468.0 443 58.2
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 9.7e-128 461.1 496 51.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.1e-126 457.6 428 55.1
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.4e-126 457.2 472 53.8
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.4e-126 456.4 422 60.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 4.1e-126 455.7 391 62.7
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 5.0e-124 448.7 437 57.0
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.1e-123 447.6 461 53.1
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.2e-123 445.7 468 53.2
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.6e-122 443.7 465 52.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.0e-121 441.0 472 52.3
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.1e-118 431.0 427 54.6
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.8e-118 430.3 440 52.5
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.1e-118 427.9 440 55.2
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 7.7e-117 424.9 346 64.2
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 3.2e-102 376.3 464 46.8
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.3e-99 366.3 289 64.7
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.6e-96 356.7 483 43.9
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.3e-95 354.4 439 47.4
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.6e-93 347.4 524 40.6
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.5e-91 340.1 361 51.5
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 2.5e-91 340.1 315 59.0
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.8e-89 334.0 475 42.1
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 4.9e-87 325.9 345 52.8
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.2e-85 321.2 304 57.9
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.0e-76 291.6 242 67.8
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.9e-75 287.3 603 33.5
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.9e-67 260.8 509 36.9
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.4e-57 228.0 451 36.1
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.4e-54 218.0 453 32.9
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.1e-51 208.4 482 32.2
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.6e-48 197.2 125 80.8
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 6.7e-44 182.6 179 56.4
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 6.3e-42 176.0 212 55.7
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.4e-41 174.9 235 48.5
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 4.1e-41 173.3 212 54.7
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.5e-40 169.9 176 59.7
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 7.7e-32 142.5 209 42.1
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 3.1e-25 120.6 111 62.2
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 3.5e-24 117.1 113 61.9
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 9.7e-19 99.0 149 44.3
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 4.8e-18 96.7 107 51.4
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 4.1e-17 93.6 67 62.7
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.6e-16 91.7 116 49.1
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 2.0e-16 91.3 93 59.1
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 7.7e-16 89.4 93 58.1
C04p27960 Brassica napus HOM05D004999 ORTHO05D024529 1.3e-15 88.6 137 46.7
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 9.4e-14 82.4 69 58.0
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.7e-13 80.9 69 56.5
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-12 77.8 238 28.6
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 8.3e-10 69.3 53 64.2
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.1e-09 68.9 36 83.3
BraA09t38023Z Brassica rapa HOM05D004999 ORTHO05D021597 2.4e-09 67.8 89 48.3
C04p06640 Brassica napus HOM05D048016 ORTHO05D041591 4.1e-09 67.0 55 65.5
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 5.4e-09 66.6 114 35.1
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 9.1e-09 65.9 79 54.4
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 9.1e-09 65.9 59 61.0
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 4.5e-08 63.5 34 82.4
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 5.5e-06 56.6 29 86.2


User provided reference genes

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