Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 1.9e-170 602.4 309 100.0
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 4.9e-158 561.2 310 93.5
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 5.0e-155 551.2 311 90.4
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 5.0e-155 551.2 311 90.4
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 3.7e-150 535.0 311 88.1
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 1.7e-147 526.2 311 87.5
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 7.1e-133 477.6 336 75.6
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 4.6e-124 448.4 332 71.1
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 5.6e-122 441.4 345 67.2
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 1.6e-121 439.9 326 71.5
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 1.1e-120 437.2 317 72.6
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 1.4e-120 436.8 330 71.2
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 1.3e-113 413.7 296 73.6
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 1.1e-109 400.6 327 65.1
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 3.0e-99 365.9 320 59.1
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 5.1e-99 365.2 320 58.8
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 1.1e-98 364.0 320 59.1
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 1.5e-98 363.6 327 58.1
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 3.3e-98 362.5 330 56.7
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 3.7e-97 359.0 323 58.8
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 4.1e-96 355.5 330 57.0
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 5.3e-96 355.1 311 56.6
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 4.5e-95 352.1 309 57.3
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 2.9e-94 349.4 320 55.0
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 3.8e-94 349.0 324 57.1
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 3.8e-94 349.0 330 56.7
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 6.5e-94 348.2 343 53.9
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 1.1e-93 347.4 330 57.0
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 1.4e-93 347.1 333 55.0
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.5e-93 346.3 320 54.7
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.5e-93 346.3 328 55.5
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.5e-93 346.3 328 55.5
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 1.6e-92 343.6 331 55.3
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 2.7e-92 342.8 324 54.6
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 6.1e-92 341.7 327 54.4
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.0e-91 340.9 325 53.2
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 1.0e-91 340.9 321 57.3
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 1.8e-91 340.1 330 54.5
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 2.3e-91 339.7 328 54.3
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 3.9e-91 339.0 323 55.1
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 5.1e-91 338.6 324 52.8
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 8.7e-91 337.8 328 54.0
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 8.7e-91 337.8 321 55.5
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 1.5e-90 337.0 319 55.8
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 3.3e-90 335.9 330 52.4
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 3.3e-90 335.9 317 54.9
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 3.3e-90 335.9 322 55.6
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 4.3e-90 335.5 323 54.8
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 9.7e-90 334.3 323 54.8
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 1.6e-89 333.6 329 52.9
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 1.6e-89 333.6 329 52.6
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 2.8e-89 332.8 316 55.1
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 2.8e-89 332.8 329 52.9
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 6.3e-89 331.6 329 54.7
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 6.3e-89 331.6 328 52.4
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 1.4e-88 330.5 329 52.9
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 2.4e-88 329.7 331 50.8
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 4.1e-88 328.9 324 53.7
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 5.3e-88 328.6 330 54.5
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 5.3e-88 328.6 330 54.5
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 5.3e-88 328.6 319 53.0
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 9.0e-88 327.8 329 52.6
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 3.8e-86 322.4 329 51.7
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 6.5e-86 321.6 321 56.1
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 1.9e-85 320.1 315 55.6
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 2.5e-85 319.7 328 53.7
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 3.2e-85 319.3 329 52.0
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 5.5e-85 318.5 318 52.5
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 7.2e-85 318.2 317 51.1
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 2.7e-84 316.2 331 52.6
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 4.6e-84 315.5 273 57.1
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 7.9e-84 314.7 328 50.6
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 1.0e-83 314.3 327 51.1
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 1.4e-83 313.9 315 51.4
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 3.9e-83 312.4 328 50.3
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 1.5e-82 310.5 330 50.6
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 2.5e-82 309.7 315 50.8
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 4.3e-82 308.9 328 49.4
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 3.7e-81 305.8 298 53.4
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 4.8e-81 305.4 324 47.8
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 5.3e-80 302.0 321 47.4
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 1.5e-79 300.4 315 49.8
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 4.5e-79 298.9 332 47.9
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 1.7e-78 297.0 301 51.2
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 3.9e-75 285.8 282 51.8
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 3.3e-74 282.7 337 45.7
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 2.8e-73 279.6 375 44.5
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 4.8e-73 278.9 324 47.8
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 1.6e-71 273.9 335 47.2
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 2.6e-71 273.1 319 50.5
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 1.0e-70 271.2 329 45.6
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 8.5e-70 268.1 268 53.0
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 2.7e-68 263.1 324 48.1
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 8.8e-67 258.1 260 50.4
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 5.9e-63 245.4 315 43.8
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 1.0e-62 244.6 327 41.3
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 1.8e-59 233.8 252 53.6
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 5.2e-59 232.3 339 39.5
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 7.5e-58 228.4 356 38.8
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 8.3e-57 224.9 333 39.9
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 1.0e-51 208.0 315 38.1
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 7.5e-50 201.8 388 35.1
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 3.7e-49 199.5 387 34.1
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 4.1e-48 196.1 189 56.6
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 5.6e-45 185.7 209 49.3
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 2.7e-39 166.8 134 61.2
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 1.3e-33 147.9 133 55.6
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.4e-32 143.7 150 50.0
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 2.0e-31 140.6 121 62.0
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 2.3e-30 137.1 118 58.5
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 3.9e-30 136.3 318 30.8
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 3.9e-30 136.3 117 54.7
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 1.5e-29 134.4 198 38.4
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.2e-25 120.6 134 49.3
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 6.0e-23 112.5 106 51.9
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 1.0e-22 111.7 103 53.4
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 2.5e-21 107.1 87 58.6
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.4e-16 91.3 69 63.8
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 7.1e-16 89.0 148 38.5
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 2.7e-15 87.0 79 54.4
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 6.0e-15 85.9 318 26.1
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 6.2e-12 75.9 109 42.2
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 1.4e-11 74.7 105 40.0
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 5.8e-10 69.3 57 61.4


User provided reference genes

Program Settings