Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-131 473.0 228 100.0
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 4.1e-130 468.0 228 98.2
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 4.1e-130 468.0 228 98.2
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 4.1e-130 468.0 228 98.7
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-127 459.5 228 95.6
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 3.5e-121 438.3 228 93.9
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.1e-113 412.5 228 85.5
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 6.0e-113 411.0 202 96.5
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.9e-111 406.0 228 84.6
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.4e-109 399.8 228 84.2
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.9e-106 389.4 228 80.3
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.2e-105 386.7 228 80.7
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 5.1e-104 381.3 229 79.5
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.0e-100 369.4 220 79.1
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-85 320.5 204 71.1
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.3e-85 318.2 203 69.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.8e-84 314.7 197 72.6
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 6.5e-83 311.2 223 66.8
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 4.6e-81 305.1 203 67.5
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.1e-81 304.7 204 66.2
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 7.9e-81 304.3 204 66.2
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.3e-80 302.8 201 67.2
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 3.0e-80 302.4 204 66.2
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 5.1e-80 301.6 201 67.2
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 8.7e-80 300.8 204 65.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.5e-79 300.1 202 66.3
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.9e-79 299.7 218 60.6
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 2.5e-79 299.3 204 65.2
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 4.3e-79 298.5 201 65.7
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 5.7e-79 298.1 201 68.2
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-78 296.6 198 69.7
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-78 296.6 198 69.7
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.2e-78 296.2 194 71.1
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.2e-78 296.2 216 63.4
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 2.8e-78 295.8 221 61.5
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 2.8e-78 295.8 201 65.2
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 4.8e-78 295.0 208 63.9
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 1.8e-77 293.1 205 64.4
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 5.3e-77 291.6 201 64.7
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 6.9e-77 291.2 204 64.7
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.2e-76 290.4 204 64.7
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.5e-76 290.0 201 66.2
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-76 290.0 198 69.2
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.5e-76 290.0 198 69.2
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.6e-76 289.3 203 64.0
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 2.6e-76 289.3 221 60.2
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 3.4e-76 288.9 204 63.2
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.0e-75 287.3 190 67.4
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.0e-75 287.3 201 66.2
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 2.2e-75 286.2 204 63.2
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 5.0e-75 285.0 194 65.5
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.9e-74 283.1 226 60.2
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 2.5e-74 282.7 203 64.0
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.2e-74 282.3 208 63.5
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 4.2e-74 282.0 190 66.3
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 4.2e-74 282.0 206 61.7
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 5.5e-74 281.6 216 61.1
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 9.4e-74 280.8 204 60.8
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.6e-73 280.0 201 63.2
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.6e-73 280.0 217 57.6
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.1e-73 279.6 214 58.4
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.7e-73 279.3 236 55.1
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 2.7e-73 279.3 194 64.9
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.1e-73 278.1 191 66.0
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 7.9e-73 277.7 217 57.1
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.0e-72 277.3 194 66.0
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-72 276.6 206 59.7
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-72 275.4 183 71.6
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-72 275.4 206 59.7
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-72 275.4 218 57.3
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.9e-72 275.4 216 57.4
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 6.7e-72 274.6 217 59.9
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 8.8e-72 274.2 194 61.9
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 8.8e-72 274.2 194 62.4
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.1e-71 273.9 196 62.8
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-71 273.9 206 58.7
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-71 273.9 206 58.7
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.5e-71 272.7 217 57.1
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 3.3e-71 272.3 220 58.2
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 4.3e-71 271.9 201 61.2
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 5.7e-71 271.6 206 58.3
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-70 270.4 202 60.4
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-70 270.4 217 58.5
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.3e-70 270.4 206 58.7
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 3.7e-70 268.9 216 56.9
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.8e-70 268.5 209 57.4
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 4.8e-70 268.5 217 57.1
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 4.8e-70 268.5 204 59.3
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 8.2e-70 267.7 217 55.3
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.4e-69 266.9 209 57.9
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.8e-69 266.5 194 61.9
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 4.1e-69 265.4 190 64.2
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 6.9e-69 264.6 206 57.8
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 9.1e-69 264.2 216 57.9
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.2e-68 263.8 194 60.3
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-68 263.1 217 56.2
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.6e-68 262.7 200 59.5
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.6e-68 262.7 188 63.8
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 1.7e-67 260.0 196 59.2
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 5.0e-67 258.5 222 55.0
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 5.0e-67 258.5 192 62.0
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 6.5e-67 258.1 196 58.7
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-66 257.3 196 58.2
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.4e-66 256.9 186 62.4
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 1.4e-66 256.9 217 54.4
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.5e-66 256.1 194 57.7
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 3.2e-66 255.8 236 53.8
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.2e-65 253.8 217 53.0
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.2e-65 253.8 199 57.3
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 2.1e-65 253.1 211 55.9
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 3.6e-65 252.3 168 69.0
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 7.9e-65 251.1 196 56.6
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-64 248.8 195 58.5
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 7.4e-63 244.6 222 55.0
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 9.7e-63 244.2 208 52.9
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-62 243.8 197 59.9
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 3.7e-62 242.3 203 54.2
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 4.8e-62 241.9 204 55.4
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-61 240.7 253 47.4
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-61 240.7 193 58.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 4.1e-61 238.8 188 56.4
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 2.6e-60 236.1 203 55.2
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-58 230.7 220 61.4
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 5.5e-58 228.4 235 47.7
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 7.2e-58 228.0 194 55.2
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 7.2e-58 228.0 187 57.8
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 9.4e-58 227.6 212 60.8
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.5e-55 220.3 196 52.0
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 2.6e-55 219.5 192 52.6
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 3.3e-55 219.2 150 64.0
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 9.7e-55 217.6 206 60.2
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-54 216.9 177 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 2.8e-54 216.1 191 50.8
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 7.0e-53 211.5 200 51.0
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.0e-51 205.3 149 59.7
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-50 203.8 177 63.3
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.5e-50 203.0 201 50.2
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.7e-49 199.5 151 62.9
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.0e-47 193.4 144 61.8
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 3.7e-46 189.1 162 59.3
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.4e-45 186.4 119 71.4
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 1.3e-43 180.6 181 46.4
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-40 170.6 121 61.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.7e-38 163.7 111 67.6
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.7e-35 153.7 196 42.9
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-32 144.4 75 93.3
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 3.0e-32 142.9 204 38.2
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 4.9e-30 135.6 184 48.4
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 2.4e-29 133.3 201 37.8
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 5.4e-29 132.1 156 49.4
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 3.5e-28 129.4 149 50.3
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 7.3e-26 121.7 87 58.6
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 9.5e-26 121.3 81 61.7
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.6e-25 119.4 96 55.2
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 2.0e-23 113.6 213 34.3
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.4e-23 112.8 70 71.4
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.8e-23 112.1 79 64.6
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 9.8e-23 111.3 82 59.8
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.3e-22 110.9 81 58.0
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.1e-21 105.9 77 58.4
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.6e-20 104.0 92 53.3
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 6.8e-16 88.6 56 62.5
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.0e-15 87.0 153 34.0
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 2.0e-15 87.0 44 90.9
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.4e-15 85.9 74 48.6
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 9.8e-15 84.7 85 57.6
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 2.4e-13 80.1 162 31.5
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.0e-08 62.8 46 65.2


User provided reference genes

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