Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-76 289.7 149 100.0
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-76 289.7 149 100.0
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-74 282.7 151 98.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.0e-73 278.5 150 97.3
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-72 276.6 149 94.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.2e-72 276.6 150 96.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-66 256.1 143 89.5
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.4e-64 248.4 143 85.3
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.9e-63 244.6 143 84.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.9e-63 244.6 142 86.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.4e-62 241.1 143 84.6
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.0e-61 239.2 143 83.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.3e-55 217.2 142 76.1
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.2e-46 188.7 143 62.2
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 5.4e-46 188.0 143 61.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.2e-46 187.2 143 62.2
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-45 186.8 143 62.2
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-45 185.7 143 61.5
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.7e-45 185.7 143 60.1
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.5e-45 185.3 143 62.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.5e-45 185.3 140 63.6
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 4.6e-45 184.9 140 61.4
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 6.0e-45 184.5 143 61.5
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.8e-45 184.1 143 60.1
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 7.8e-45 184.1 143 59.4
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 7.8e-45 184.1 142 62.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.0e-44 182.2 143 61.5
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.0e-44 182.2 142 62.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.0e-44 182.2 140 60.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 6.6e-44 181.0 143 60.8
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 6.6e-44 181.0 143 60.8
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.1e-43 180.3 143 59.4
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.9e-43 179.5 143 58.0
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.9e-43 179.5 135 63.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 3.3e-43 178.7 143 60.1
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.3e-43 178.7 142 58.5
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 4.3e-43 178.3 143 59.4
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 4.3e-43 178.3 143 59.4
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.5e-43 177.2 143 58.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.2e-42 176.8 143 59.4
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.2e-42 176.8 143 59.4
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 57.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 58.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.1e-42 176.0 143 58.7
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-42 175.3 143 57.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.6e-42 175.3 143 57.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.6e-42 175.3 143 58.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.7e-42 174.9 143 58.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 6.2e-42 174.5 143 58.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 8.1e-42 174.1 143 56.6
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.4e-41 173.3 142 59.2
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.4e-41 173.3 143 57.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-41 172.9 143 56.6
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.8e-41 172.9 140 57.9
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.3e-41 172.6 143 56.6
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.1e-41 172.2 105 79.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.1e-41 172.2 141 57.4
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.0e-41 171.8 142 54.9
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 6.8e-41 171.0 142 56.3
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 8.9e-41 170.6 143 54.5
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 8.9e-41 170.6 155 55.5
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 8.9e-41 170.6 143 55.9
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 8.9e-41 170.6 141 57.4
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 54.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 53.8
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 53.8
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-40 169.9 142 55.6
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-40 169.9 143 54.5
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.0e-40 169.5 143 55.2
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 2.6e-40 169.1 143 55.2
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 3.4e-40 168.7 143 53.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.4e-40 168.7 143 53.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.4e-40 168.7 143 53.8
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 4.4e-40 168.3 143 55.9
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 5.8e-40 167.9 143 55.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 5.8e-40 167.9 140 55.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 5.8e-40 167.9 142 57.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 5.8e-40 167.9 143 55.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.8e-40 167.9 143 55.2
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 7.5e-40 167.5 143 58.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 7.5e-40 167.5 143 55.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-40 167.5 143 53.8
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-40 167.5 143 53.8
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-40 167.5 145 53.1
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.7e-39 166.4 143 55.2
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.7e-39 166.4 143 54.5
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.2e-39 166.0 150 54.0
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 6.4e-39 164.5 142 54.9
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-38 163.7 142 52.1
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.1e-38 163.7 141 53.9
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.4e-38 163.3 153 52.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.4e-38 163.3 143 54.5
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.4e-38 163.3 142 52.1
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.9e-38 162.9 143 56.6
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.9e-38 162.9 143 55.2
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.4e-38 162.5 143 53.8
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.2e-38 162.2 139 54.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 3.2e-38 162.2 142 52.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 4.1e-38 161.8 143 54.5
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 9.2e-38 160.6 142 52.1
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-37 160.2 154 51.9
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.6e-37 159.8 141 53.9
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 4.6e-37 158.3 142 51.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.6e-37 158.3 149 51.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 6.0e-37 157.9 140 56.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 6.0e-37 157.9 140 50.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.8e-37 157.5 142 52.1
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.0e-36 157.1 143 53.8
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.3e-36 156.8 174 46.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.3e-36 156.8 143 53.1
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.3e-36 156.8 143 52.4
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.7e-36 156.4 142 49.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.7e-36 156.4 142 50.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.3e-36 156.0 141 51.1
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.3e-36 156.0 141 51.1
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.3e-36 156.0 141 53.2
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 3.0e-36 155.6 142 52.1
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 3.0e-36 155.6 135 54.8
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.9e-36 155.2 144 50.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.9e-36 155.2 142 50.7
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.9e-36 155.2 142 50.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 6.6e-36 154.5 141 50.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.5e-35 153.3 142 48.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.9e-35 152.9 154 49.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 9.5e-35 150.6 140 50.7
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.8e-34 149.1 140 50.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.6e-34 148.7 146 51.4
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.4e-33 146.7 141 51.8
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.4e-33 146.0 163 46.6
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.4e-33 146.0 141 51.8
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 5.2e-33 144.8 140 50.7
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 5.2e-33 144.8 186 44.6
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 8.9e-33 144.1 215 39.5
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-31 139.4 107 59.8
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 6.4e-31 137.9 141 48.2
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-28 129.8 108 54.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 6.6e-28 127.9 144 44.4
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 5.6e-27 124.8 108 52.8
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 5.6e-27 124.8 108 52.8
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-26 123.6 142 42.3
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-25 119.8 141 41.8
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-24 115.9 144 46.5
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 9.9e-24 114.0 133 44.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 3.8e-23 112.1 127 45.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 3.8e-23 112.1 127 45.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.2e-22 109.0 150 38.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 7.8e-21 104.4 82 56.1
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.7e-20 103.2 82 58.5
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.0e-20 102.4 82 56.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 3.0e-20 102.4 81 58.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.5e-19 99.4 149 35.6
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 5.6e-19 98.2 86 52.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 7.3e-19 97.8 82 53.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-18 96.7 82 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 6.2e-18 94.7 135 31.9
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.2e-18 94.7 92 47.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-16 90.5 121 33.1
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.6e-16 89.4 137 33.6
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 8.4e-15 84.3 142 33.1
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.4e-14 83.6 96 41.7
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-14 83.6 72 55.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 132 31.1
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.2e-14 82.0 107 35.5
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 2.3e-12 76.3 102 42.2
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.4e-09 66.2 149 28.9
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 3.1e-09 65.9 52 53.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 9.0e-09 64.3 72 43.1
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.9e-07 59.3 137 23.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.8e-07 58.9 81 42.0
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 8.4e-07 57.8 39 56.4


User provided reference genes

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