Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 5.6e-66 254.2 137 100.0
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 5.6e-66 254.2 137 100.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-64 250.0 137 98.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.4e-43 179.9 227 53.3
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 5.1e-43 177.9 228 54.4
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 5.1e-43 177.9 228 54.4
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 8.8e-43 177.2 221 54.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-42 176.8 228 53.9
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.1e-42 176.8 228 53.9
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-42 175.3 228 53.5
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 6.5e-38 161.0 224 48.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.4e-37 159.8 227 48.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.5e-37 159.1 224 47.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.0e-35 152.1 221 46.6
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 5.7e-34 147.9 227 44.9
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 2.6e-31 139.0 72 100.0
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 9.4e-29 130.6 225 43.1
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.2e-25 117.5 213 42.3
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-24 116.7 64 98.4
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 4.1e-24 115.2 64 96.9
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 7.0e-24 114.4 64 96.9
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-22 110.5 189 45.0
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 8.5e-22 107.5 109 62.4
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-19 100.5 57 96.5
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.0e-19 98.6 222 36.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 4.0e-19 98.6 227 37.0
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 5.2e-19 98.2 220 35.0
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 5.2e-19 98.2 221 37.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.8e-19 97.4 226 35.0
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.8e-19 97.4 226 35.0
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.2e-18 97.1 220 35.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.5e-18 96.7 218 36.7
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.5e-18 96.7 218 36.7
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.6e-18 95.9 226 34.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 7.5e-18 94.4 223 37.2
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 9.7e-18 94.0 225 36.4
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.7e-18 94.0 226 34.5
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 9.7e-18 94.0 217 35.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-17 93.6 226 34.5
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.3e-17 93.6 217 36.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 1.7e-17 93.2 226 34.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.2e-17 92.8 226 34.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.7e-17 92.0 221 35.7
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 3.7e-17 92.0 223 34.5
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.7e-17 92.0 223 34.5
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.8e-17 91.7 219 35.6
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 6.3e-17 91.3 161 42.2
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 6.3e-17 91.3 220 34.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.3e-17 91.3 218 35.3
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.8e-16 89.7 217 34.1
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.1e-16 89.0 225 35.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.1e-16 88.6 223 34.1
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 5.3e-16 88.2 218 35.3
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 9.1e-16 87.4 222 33.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.2e-15 87.0 221 35.3
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.6e-15 86.7 222 33.3
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.0e-15 86.3 218 33.9
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.5e-15 85.5 223 33.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.5e-15 85.5 219 32.4
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.5e-15 85.5 224 33.5
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 5.9e-15 84.7 222 32.9
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 7.7e-15 84.3 220 33.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 7.7e-15 84.3 219 34.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.0e-14 84.0 211 32.7
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.3e-14 83.6 210 33.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.3e-14 83.6 219 33.3
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.2e-14 82.8 213 32.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.2e-14 82.8 219 35.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.9e-14 82.4 216 31.5
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.9e-14 82.4 218 33.9
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.9e-14 82.4 218 33.5
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 3.8e-14 82.0 218 33.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 6.5e-14 81.3 210 33.3
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-13 80.5 62 67.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.1e-13 80.5 62 67.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.1e-13 80.5 206 33.5
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.1e-13 80.5 220 32.7
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 4.2e-13 78.6 204 32.4
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 4.2e-13 78.6 62 66.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 4.2e-13 78.6 62 66.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 4.2e-13 78.6 218 32.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 9.4e-13 77.4 217 30.9
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.2e-12 77.0 220 30.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.2e-12 77.0 64 65.6
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.6e-12 76.6 196 33.7
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-12 76.6 158 39.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.6e-12 76.6 220 32.7
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.1e-12 76.3 187 33.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.7e-12 75.9 208 33.7
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.7e-12 75.9 60 65.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.7e-12 75.9 232 31.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.7e-12 75.9 232 31.0
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.6e-12 75.5 61 65.6
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 3.6e-12 75.5 209 32.1
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.6e-12 75.5 64 64.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 3.6e-12 75.5 216 32.4
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 4.7e-12 75.1 241 30.7
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.7e-12 75.1 232 31.0
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.7e-12 75.1 241 30.7
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 4.7e-12 75.1 64 64.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 6.1e-12 74.7 64 64.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.0e-12 74.3 206 32.0
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 8.0e-12 74.3 212 32.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.4e-11 73.6 190 33.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-11 73.6 232 30.6
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.3e-11 72.8 215 32.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.3e-11 72.8 215 32.6
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-11 72.4 64 60.9
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.0e-11 72.0 59 61.0
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 5.2e-11 71.6 220 30.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.8e-11 71.2 62 62.9
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 6.8e-11 71.2 232 29.7
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 6.8e-11 71.2 61 62.3
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 8.8e-11 70.9 60 63.3
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 8.8e-11 70.9 60 63.3
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 8.8e-11 70.9 59 62.7
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 8.8e-11 70.9 61 60.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-10 70.5 62 58.1
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.4e-10 68.6 58 62.1
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 7.5e-10 67.8 217 29.5
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 9.8e-10 67.4 59 59.3
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 9.8e-10 67.4 196 30.6
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 9.8e-10 67.4 64 57.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-09 66.6 64 57.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.2e-09 66.2 217 28.6
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.8e-09 65.9 214 29.9
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-09 64.7 171 37.4
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-08 63.9 60 56.7
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.1e-08 62.4 59 57.6
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.2e-07 60.5 186 30.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.2e-07 60.5 206 28.6
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 4.5e-07 58.5 39 76.9
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 5.9e-07 58.2 59 50.8
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.8e-06 55.5 131 38.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.0e-06 55.1 62 41.9
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 8.6e-06 54.3 230 27.0


User provided reference genes

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