Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 0.0e+00 1189.1 616 100.0
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 1.7e-247 859.4 590 81.4
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 8.5e-247 857.1 544 86.6
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 3.5e-208 728.8 455 87.9
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 1.1e-188 664.1 590 68.3
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 5.8e-187 658.3 586 68.1
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 9.0e-180 634.4 591 65.8
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 6.3e-173 611.7 583 65.2
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 9.0e-172 607.8 591 64.1
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 3.8e-154 549.3 588 60.0
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 1.4e-132 477.6 485 62.1
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 9.2e-116 421.8 602 50.2
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 5.2e-95 352.8 621 42.0
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 3.4e-94 350.1 598 42.5
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 7.6e-94 349.0 581 41.5
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 9.9e-94 348.6 575 43.0
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 2.2e-93 347.4 592 43.2
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 4.9e-93 346.3 583 42.9
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 1.9e-92 344.4 589 41.9
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 2.4e-92 344.0 563 42.8
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.1e-92 343.2 583 42.4
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 4.1e-92 343.2 580 41.2
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 4.1e-92 343.2 589 42.1
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 9.2e-92 342.0 584 43.5
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 1.6e-91 341.3 592 42.6
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 6.0e-91 339.3 595 42.7
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 1.3e-90 338.2 611 40.4
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 7.3e-89 332.4 580 42.6
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 2.8e-88 330.5 581 40.4
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 8.9e-87 325.5 579 40.8
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 2.0e-86 324.3 619 39.9
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 2.0e-86 324.3 561 41.4
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 2.6e-86 323.9 551 42.3
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 4.9e-85 319.7 568 40.3
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 6.4e-85 319.3 571 40.8
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 7.1e-84 315.8 565 41.8
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 1.6e-83 314.7 591 40.8
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.6e-83 313.2 591 40.8
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 3.0e-82 310.5 571 40.6
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 6.6e-82 309.3 591 41.3
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 8.7e-82 308.9 586 40.4
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 3.3e-81 307.0 582 41.6
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 6.2e-80 302.8 634 37.7
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 1.2e-78 298.5 559 38.8
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 1.5e-78 298.1 548 39.1
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 2.0e-78 297.7 632 37.3
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 5.8e-78 296.2 581 39.1
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 7.6e-78 295.8 564 39.4
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 1.3e-77 295.0 564 39.5
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 1.7e-77 294.7 626 37.2
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 4.9e-77 293.1 632 35.9
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 4.9e-77 293.1 559 39.0
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 6.4e-77 292.7 637 37.4
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 1.1e-76 292.0 566 39.2
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 1.9e-76 291.2 552 37.5
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 2.4e-76 290.8 505 42.4
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 7.1e-76 289.3 669 36.3
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 9.3e-76 288.9 632 36.9
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 4.6e-75 286.6 582 37.6
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 7.9e-75 285.8 559 37.9
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 2.3e-74 284.3 578 38.4
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 6.7e-74 282.7 579 38.9
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 7.4e-73 279.3 578 37.4
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 9.6e-73 278.9 604 36.1
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 2.8e-72 277.3 582 38.1
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 4.9e-69 266.5 565 36.5
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 1.2e-67 261.9 645 36.0
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 3.3e-65 253.8 651 34.6
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 2.4e-63 247.7 584 34.6
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 5.3e-63 246.5 564 35.1
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 1.6e-59 235.0 542 35.4
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 7.9e-59 232.6 463 37.8
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 1.8e-58 231.5 595 32.6
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 1.8e-58 231.5 569 35.1
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 1.1e-57 228.8 457 37.6
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 1.9e-57 228.0 396 41.7
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 3.3e-57 227.3 592 34.5
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 4.3e-57 226.9 466 38.0
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 9.0e-55 219.2 581 32.5
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 2.0e-46 191.4 609 32.2
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 8.8e-42 176.0 505 31.9
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 2.2e-32 144.8 152 55.3
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 3.2e-28 131.0 168 47.6
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 1.0e-26 125.9 416 29.3
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 1.4e-26 125.6 171 47.4
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 6.7e-26 123.2 435 32.0
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 9.7e-25 119.4 506 25.1
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 1.1e-23 115.9 572 25.2
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.8e-23 115.2 172 43.0
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 1.8e-23 115.2 172 43.0
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.2e-22 112.5 346 32.7
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 1.0e-21 109.4 239 33.1
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 5.5e-20 103.6 344 30.2
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 8.0e-19 99.8 581 24.3
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 1.5e-17 95.5 461 26.9
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 5.9e-14 83.6 166 39.8
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 2.4e-07 61.6 100 40.0
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 4.1e-07 60.8 58 55.2


User provided reference genes

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