Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 4.8e-260 900.6 442 100.0
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 7.2e-256 886.7 439 98.6
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 4.4e-253 877.5 440 98.2
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 1.8e-251 872.1 439 97.3
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.7e-250 868.2 440 97.5
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 4.5e-250 867.5 440 97.0
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 6.6e-249 863.6 441 95.2
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 4.5e-242 840.9 441 92.5
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 1.7e-236 822.4 438 90.6
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 4.6e-234 814.3 439 89.5
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 9.5e-232 806.6 439 89.7
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 3.0e-225 785.0 445 86.1
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.3e-220 769.6 440 84.5
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 2.4e-211 738.8 437 80.8
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 2.1e-210 735.7 441 80.0
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 2.3e-209 732.3 437 78.9
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.1e-208 729.9 440 79.8
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 9.6e-208 726.9 438 79.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 4.0e-206 721.5 438 78.1
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 5.8e-205 717.6 438 78.3
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 5.8e-205 717.6 440 76.1
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.3e-204 716.5 440 78.2
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 6.4e-204 714.1 438 78.1
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 1.1e-203 713.4 437 78.3
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 2.4e-203 712.2 440 76.4
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 3.2e-203 711.8 438 78.8
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 5.4e-203 711.1 440 76.6
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.6e-202 709.5 439 78.1
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.6e-202 709.5 440 75.9
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 3.5e-202 708.4 440 76.8
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 6.0e-202 707.6 440 76.8
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 7.8e-202 707.2 443 76.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.7e-201 706.1 437 76.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.0e-201 705.3 437 76.7
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 1.5e-200 703.0 439 76.8
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.9e-200 702.6 441 76.9
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 2.5e-200 702.2 437 75.7
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.3e-200 701.4 437 76.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 4.3e-200 701.4 440 76.6
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 1.6e-199 699.5 442 76.9
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 6.2e-199 697.6 457 73.1
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 6.2e-199 697.6 442 76.0
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.1e-198 696.8 440 75.0
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.4e-198 696.4 453 74.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 1.8e-198 696.0 440 74.8
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 5.3e-198 694.5 437 75.5
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 5.3e-198 694.5 440 75.9
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 9.0e-198 693.7 442 74.7
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.5e-197 693.0 437 74.1
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 3.4e-197 691.8 428 76.2
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.6e-197 690.6 440 75.2
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 9.9e-197 690.3 428 76.4
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 1.3e-196 689.9 430 76.3
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.7e-196 689.5 428 75.5
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 3.8e-196 688.3 439 75.4
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 8.4e-196 687.2 438 74.2
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.4e-195 686.4 441 74.8
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 7.1e-195 684.1 437 73.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 9.3e-195 683.7 438 73.7
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 9.3e-195 683.7 438 74.0
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.1e-194 682.6 443 75.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 2.7e-194 682.2 425 76.2
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 7.9e-194 680.6 428 73.8
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.0e-193 680.2 438 73.3
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.8e-193 679.5 423 76.8
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 2.3e-193 679.1 437 74.4
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 6.7e-193 677.6 428 74.3
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 4.3e-192 674.9 437 71.9
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 5.6e-192 674.5 441 73.9
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 5.6e-192 674.5 426 76.5
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.6e-191 672.9 439 72.2
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 4.8e-191 671.4 430 75.1
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.1e-190 670.2 435 73.8
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.4e-190 669.8 393 80.2
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 3.1e-190 668.7 422 76.3
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.2e-189 666.8 469 71.0
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.6e-189 665.6 442 73.5
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-188 663.3 453 72.2
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.7e-188 662.9 419 75.2
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 3.8e-188 661.8 441 73.0
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.9e-187 659.4 428 71.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.0e-185 653.7 423 73.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 8.2e-183 644.0 426 71.4
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.5e-181 639.8 428 69.4
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 1.5e-181 639.8 420 71.9
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 9.3e-179 630.6 424 72.4
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.0e-178 627.9 451 68.5
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.9e-176 622.9 474 65.8
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.3e-175 620.2 429 68.8
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.4e-173 612.1 398 73.1
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 6.1e-170 601.3 496 62.1
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 7.9e-170 600.9 435 64.8
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 6.9e-166 587.8 447 64.7
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 6.9e-166 587.8 436 62.8
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 1.6e-162 576.6 421 68.9
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.7e-159 566.6 536 56.2
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 2.8e-159 565.8 396 69.7
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 4.8e-159 565.1 481 57.2
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 2.0e-157 559.7 472 60.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 3.5e-157 558.9 355 76.6
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.0e-156 557.4 438 64.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.0e-156 557.4 365 73.4
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 2.2e-151 539.7 375 69.3
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.8e-150 536.6 434 59.9
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 2.0e-149 533.1 424 61.1
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 5.5e-147 525.0 437 60.9
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.2e-144 517.3 443 57.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 7.7e-141 504.6 270 89.3
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.3e-140 503.8 430 55.6
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.7e-140 503.4 422 60.7
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 8.5e-140 501.1 467 55.9
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.9e-133 478.4 430 54.0
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.0e-132 477.6 437 54.5
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 8.6e-124 448.0 412 54.4
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 3.5e-109 399.4 247 73.3
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.5e-101 372.9 245 75.1
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 1.2e-98 364.4 391 46.0
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 3.2e-94 349.7 449 41.6
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 2.7e-93 346.7 194 80.4
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.1e-91 341.3 193 78.8
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 1.1e-91 341.3 282 61.0
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 2.6e-88 330.1 245 69.4
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 2.9e-87 326.6 514 36.6
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.0e-63 248.4 243 57.2
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.1e-62 245.0 162 72.2
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 2.1e-61 240.7 198 62.1
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.1e-57 228.4 141 80.1
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 4.6e-53 213.0 152 70.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.1e-49 199.9 170 56.5
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 4.5e-48 196.4 187 57.8
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 8.5e-47 192.2 145 69.7
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.1e-46 191.8 419 31.3
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 1.1e-46 191.8 185 54.1
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 2.1e-45 187.6 113 75.2
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 2.6e-43 180.6 92 82.6
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 1.4e-41 174.9 125 72.0
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 3.6e-37 160.2 96 78.1
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.0e-37 159.1 132 56.8
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 4.0e-36 156.8 130 65.4
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 4.0e-36 156.8 86 82.6
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.8e-33 147.9 126 64.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 5.0e-31 139.8 126 59.5
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 9.4e-22 109.0 184 40.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.7e-21 107.5 96 53.1
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 6.1e-21 106.3 67 80.6
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 8.0e-21 105.9 65 86.2
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 8.3e-18 95.9 67 73.1
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 3.5e-16 90.5 55 80.0
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 3.5e-16 90.5 55 80.0
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 7.7e-16 89.4 53 81.1
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 7.2e-14 82.8 82 56.1
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 5.7e-11 73.2 51 72.5
A08p00430 Brassica napus HOM05D004472 ORTHO05D033033 3.7e-10 70.5 65 61.5
C06p10840 Brassica napus HOM05D004472 ORTHO05D033033 3.7e-10 70.5 65 61.5
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.4e-09 67.8 43 74.4
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.2e-09 67.4 37 83.8
BolC1t01387H Brassica oleracea HOM05D004472 ORTHO05D033033 4.6e-08 63.5 37 89.2
BolC1t01386H Brassica oleracea HOM05D004472 ORTHO05D041278 1.7e-07 61.6 79 50.6
A08p00440 Brassica napus HOM05D004472 ORTHO05D041278 6.6e-07 59.7 79 49.4
BolC4t21966H Brassica oleracea HOM05D004472 ORTHO05D013781 6.6e-07 59.7 43 65.1


User provided reference genes

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