Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 0.0e+00 1128.2 570 100.0
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 0.0e+00 1096.3 570 96.7
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 0.0e+00 1085.9 596 93.0
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.4e-306 1054.3 596 90.3
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.5e-293 1012.3 596 87.2
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.5e-293 1012.3 596 87.2
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 6.8e-291 1003.4 596 86.7
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.9e-288 995.3 596 86.2
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 8.6e-286 986.5 596 85.1
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 4.3e-285 984.2 501 100.0
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.1e-283 979.5 596 84.7
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.2e-279 966.1 601 83.0
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 2.5e-277 958.4 501 97.0
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.5e-253 879.4 570 78.2
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 5.7e-245 850.9 594 72.9
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.1e-223 779.2 594 69.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 8.3e-212 740.7 549 75.4
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 2.6e-197 692.6 570 62.3
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.4e-195 686.0 594 59.8
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 3.2e-195 685.6 594 59.1
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 4.3e-192 675.2 601 59.1
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 7.5e-189 664.5 595 58.5
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 9.8e-189 664.1 599 57.3
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.3e-188 663.7 599 57.3
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.3e-188 663.7 596 59.4
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 2.9e-188 662.5 599 57.1
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.7e-188 662.1 597 57.6
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 3.7e-188 662.1 593 58.2
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.1e-187 660.6 622 57.2
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 1.4e-187 660.2 596 58.2
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 2.4e-187 659.4 597 57.0
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 3.2e-187 659.1 594 57.9
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-186 657.1 596 58.1
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 1.2e-186 657.1 594 57.9
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.5e-186 655.6 594 58.2
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.0e-185 654.1 572 59.1
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.3e-185 653.7 594 57.7
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.7e-185 653.3 597 58.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.9e-185 652.1 594 57.7
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.6e-185 651.4 594 57.7
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 4.3e-184 648.7 592 56.8
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 2.1e-183 646.4 592 57.3
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.1e-183 646.4 601 57.7
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.4e-182 643.7 593 56.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.1e-182 642.5 596 56.5
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 5.2e-182 641.7 594 57.1
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 6.8e-182 641.3 594 56.6
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 8.9e-182 641.0 596 56.9
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.5e-181 640.2 595 57.3
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 2.0e-181 639.8 595 57.1
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 2.0e-181 639.8 595 56.5
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.6e-181 639.4 596 56.4
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 5.8e-181 638.3 599 56.3
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 7.5e-181 637.9 594 56.2
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.3e-180 637.1 592 57.1
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 3.7e-180 635.6 594 57.2
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 6.4e-180 634.8 594 55.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 8.3e-180 634.4 595 55.5
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.6e-178 630.2 596 55.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.5e-178 629.0 594 55.7
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.5e-178 629.0 597 56.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 6.0e-178 628.2 592 56.1
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.3e-177 627.1 596 55.2
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.7e-177 626.7 596 55.4
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.3e-177 626.3 600 56.0
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 3.0e-177 625.9 591 54.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 3.9e-177 625.5 594 56.2
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.6e-177 624.8 595 55.5
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.1e-176 624.0 593 54.8
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.3e-176 622.5 596 55.2
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 5.6e-176 621.7 609 55.0
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 7.3e-176 621.3 598 56.4
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.8e-175 619.4 667 51.0
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 2.8e-175 619.4 599 54.6
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 3.6e-175 619.0 597 55.3
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 1.4e-174 617.1 618 54.0
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.8e-174 616.7 628 53.2
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.1e-174 615.9 670 50.9
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.5e-173 613.6 604 54.8
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 2.0e-173 613.2 604 54.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 5.8e-173 611.7 601 55.1
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.3e-172 610.5 596 55.7
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.9e-172 609.4 597 54.6
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.1e-171 607.4 597 54.1
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.9e-171 606.7 632 52.5
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 7.8e-170 601.3 602 54.5
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-169 600.9 594 54.2
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 2.5e-168 596.3 560 56.6
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.3e-168 595.5 594 53.7
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.3e-168 595.5 596 54.2
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 2.1e-167 593.2 617 53.2
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 4.0e-166 589.0 590 54.6
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.2e-164 583.2 595 53.4
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.3e-161 573.9 595 51.9
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 9.6e-160 567.8 605 52.1
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.6e-159 565.8 555 55.0
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 5.3e-158 562.0 504 59.9
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 6.4e-156 555.1 534 54.1
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 7.1e-155 551.6 560 53.6
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.1e-152 544.3 599 48.4
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.2e-149 534.3 605 48.9
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.2e-149 534.3 599 49.9
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 2.9e-148 529.6 602 49.5
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.9e-147 526.9 441 69.2
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.2e-141 507.7 576 49.1
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.2e-141 507.7 601 45.1
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 5.3e-134 482.3 626 43.6
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 9.0e-134 481.5 594 45.5
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-127 459.1 524 49.4
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 3.1e-126 456.4 446 56.5
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.2e-123 446.4 415 58.6
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 2.1e-122 443.7 466 52.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 3.7e-119 433.0 608 41.8
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 2.3e-105 387.1 370 54.6
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.5e-104 384.4 280 70.0
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 7.5e-104 382.1 571 40.5
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.3e-102 375.9 598 38.8
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.4e-97 361.3 611 37.0
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.5e-93 346.3 596 37.9
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 6.8e-89 332.4 249 66.3
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 3.3e-83 313.5 619 34.6
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 3.6e-82 310.1 600 33.2
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 7.0e-78 295.8 167 91.0
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 8.6e-76 288.9 312 52.2
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.3e-75 285.8 283 52.3
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.7e-71 274.6 365 49.3
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.2e-66 258.5 274 52.9
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.1e-65 255.4 250 54.8
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.5e-59 235.0 134 88.1
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 2.4e-57 227.6 128 92.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.1e-54 218.8 390 39.5
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.2e-50 205.3 283 43.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.7e-50 203.4 263 46.4
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 5.2e-49 199.9 116 89.7
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 6.9e-49 199.5 131 67.2
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 1.3e-39 168.7 130 59.2
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 6.0e-37 159.8 564 27.0
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.9e-35 154.8 266 37.2
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.5e-27 128.6 133 45.9
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 6.2e-26 123.2 167 47.3
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 8.2e-26 122.9 167 47.9
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 6.9e-25 119.8 94 60.6
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.7e-23 115.2 80 66.2
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 3.5e-21 107.5 384 24.7
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 6.3e-18 96.7 75 64.0
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.5e-16 90.5 80 60.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.4e-14 85.5 40 97.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.4e-14 85.5 40 97.5
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 7.2e-14 83.2 39 97.4
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.7e-13 81.3 88 46.6
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 3.6e-13 80.9 39 94.9
C03p30700 Brassica napus HOM05D004766 ORTHO05D006159 1.1e-11 75.9 108 42.6
BraA10t43874Z Brassica rapa HOM05D004766 ORTHO05D033383 1.1e-11 75.9 87 48.3
BolC9t58408H Brassica oleracea HOM05D004766 ORTHO05D033383 2.5e-11 74.7 102 45.1
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.4e-09 68.2 55 56.4
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 2.9e-07 61.2 108 32.4
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 5.0e-07 60.5 57 52.6


User provided reference genes

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