Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-75 286.2 144 100.0
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 5.2e-70 267.7 144 95.1
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.5e-64 248.8 132 94.7
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.5e-64 248.8 132 94.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.2e-54 214.5 130 83.1
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.8e-54 214.2 130 81.5
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 8.9e-54 213.8 132 80.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-53 213.4 131 82.4
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.5e-53 213.0 130 82.3
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-53 212.6 130 82.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.0e-53 212.6 130 82.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.0e-53 212.6 131 80.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 9.8e-53 210.3 130 81.5
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 8.3e-52 207.2 136 81.6
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.8e-51 206.1 130 79.2
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.2e-51 205.3 130 79.2
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.0e-50 202.6 130 78.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 6.0e-50 201.1 130 77.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-49 199.9 130 78.5
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.6e-49 197.2 130 75.4
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.2e-47 193.4 129 74.4
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.3e-46 189.1 129 78.3
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-43 179.9 108 83.3
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.9e-40 169.5 130 65.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.2e-39 164.5 127 64.6
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 8.1e-39 164.1 122 68.0
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.8e-38 162.9 130 63.1
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.8e-38 162.9 130 63.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.5e-37 159.8 124 66.9
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.5e-37 159.8 130 62.3
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-37 159.8 130 62.3
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.5e-37 159.8 130 62.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.4e-37 158.7 130 63.1
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.5e-37 157.5 126 61.9
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.3e-36 156.8 133 60.2
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.3e-36 156.8 123 64.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.2e-36 156.0 130 58.5
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.9e-36 155.6 125 63.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.7e-36 155.2 133 60.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.7e-36 155.2 130 60.8
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.9e-36 154.8 129 60.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.4e-36 154.5 126 61.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 6.4e-36 154.5 129 61.2
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 6.4e-36 154.5 129 61.2
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.4e-36 154.5 129 61.2
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 6.4e-36 154.5 120 65.0
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 8.3e-36 154.1 120 64.2
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.1e-35 153.7 129 60.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.4e-35 153.3 129 61.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.9e-35 152.9 130 60.0
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.9e-35 152.9 133 60.2
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.9e-35 152.9 129 59.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.4e-35 152.5 130 59.2
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.1e-35 151.8 130 60.0
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.4e-35 151.4 129 59.7
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 7.1e-35 151.0 122 63.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.6e-34 149.8 130 59.2
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.1e-34 149.4 130 60.0
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.7e-34 149.1 136 57.4
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.5e-34 148.7 120 62.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 4.6e-34 148.3 129 58.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 4.6e-34 148.3 130 58.5
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 6.0e-34 147.9 129 58.9
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 7.8e-34 147.5 120 61.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 7.8e-34 147.5 129 58.9
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 7.8e-34 147.5 116 65.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 7.8e-34 147.5 129 57.4
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.0e-33 147.1 130 57.7
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.0e-33 147.1 128 56.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.0e-33 147.1 118 60.2
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.3e-33 146.7 124 58.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.3e-33 146.7 127 57.5
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.7e-33 146.4 119 62.2
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.0e-33 145.6 119 61.3
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.0e-33 145.6 129 57.4
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.0e-33 145.6 130 56.2
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.0e-33 145.6 128 57.0
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.9e-33 145.2 136 55.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.6e-33 144.4 129 58.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 8.6e-33 144.1 119 60.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.1e-32 143.7 119 59.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-32 143.7 128 55.5
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.1e-32 143.7 130 55.4
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.1e-32 143.7 120 59.2
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.5e-32 143.3 110 63.6
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.9e-32 142.9 118 63.6
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-32 142.9 138 55.8
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.9e-32 142.9 120 61.7
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.9e-32 142.9 124 58.9
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.5e-32 142.5 129 58.9
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.5e-32 142.5 130 54.6
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.3e-32 142.1 127 56.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.3e-32 141.7 120 59.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.3e-32 141.7 134 55.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.3e-32 141.7 127 58.3
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 5.6e-32 141.4 128 54.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.2e-31 140.2 118 60.2
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.2e-31 140.2 124 58.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.6e-31 139.8 125 57.6
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.6e-31 139.8 124 57.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.6e-31 139.8 130 54.6
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.6e-31 139.8 130 54.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.1e-31 139.4 128 52.3
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.8e-31 139.0 129 56.6
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.1e-31 137.5 119 57.1
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.1e-30 137.1 127 56.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.4e-30 136.7 125 56.8
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.4e-30 136.7 128 53.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.8e-30 136.3 131 54.2
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.8e-30 136.3 130 54.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.1e-30 135.6 119 56.3
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 4.0e-30 135.2 125 55.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.0e-30 135.2 125 55.2
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-29 133.7 132 53.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.0e-29 132.9 125 56.0
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 2.6e-29 132.5 124 57.3
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 2.9e-28 129.0 127 49.6
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.9e-28 128.3 131 51.9
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 6.4e-28 127.9 132 48.5
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.1e-27 127.1 96 62.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.2e-27 125.6 119 55.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 5.4e-27 124.8 101 59.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 2.7e-26 122.5 90 66.7
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.6e-26 121.7 91 62.6
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 3.0e-25 119.0 95 61.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.6e-23 112.1 119 51.3
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.4e-22 110.2 125 42.4
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.1e-22 109.0 125 43.2
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.4e-21 105.5 112 52.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.7e-20 103.2 94 53.2
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.1e-19 100.5 123 43.1
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.2e-19 98.6 114 43.9
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 5.4e-19 98.2 66 66.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.6e-18 96.7 130 38.5
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 7.8e-18 94.4 66 66.7
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.6e-17 91.3 90 45.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.9e-16 89.7 129 41.9
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.3e-15 87.0 130 44.6
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-15 86.3 130 43.8
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.8e-15 85.9 108 44.4
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.8e-15 85.1 130 43.8
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 8.1e-15 84.3 73 58.9
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.6e-13 79.3 63 57.1
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 5.8e-13 78.2 76 51.3
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.7e-12 76.6 100 39.0
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.1e-10 69.7 63 49.2
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 4.6e-10 68.6 53 56.6
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.0e-09 65.9 50 58.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 4.3e-08 62.0 80 37.5
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 2.4e-06 56.2 35 77.1
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 5.3e-06 55.1 87 36.8


User provided reference genes

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