Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 6.6e-93 344.0 168 100.0
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-92 342.8 168 99.4
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 3.0e-85 318.5 168 94.0
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 8.7e-85 317.0 168 92.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.4e-79 299.7 171 84.2
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.9e-79 299.3 171 85.4
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.9e-79 299.3 171 85.4
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-79 298.1 171 84.8
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 3.5e-78 295.0 168 85.7
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-78 294.7 168 86.3
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-76 290.0 169 84.6
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.4e-74 282.3 153 85.0
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 7.6e-73 277.3 169 80.5
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.9e-71 272.7 172 79.7
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 5.5e-71 271.2 170 79.4
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.5e-68 263.1 152 80.3
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-50 203.4 160 68.8
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.4e-50 203.4 168 64.3
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.1e-50 201.8 170 63.5
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 9.1e-50 200.7 173 63.6
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.0e-49 199.5 167 62.9
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 5.9e-49 198.0 96 97.9
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 7.7e-49 197.6 169 63.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.9e-48 195.7 169 62.7
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.0e-48 194.9 169 63.3
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 8.5e-48 194.1 168 63.1
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 8.5e-48 194.1 168 63.1
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 8.5e-48 194.1 160 64.4
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-47 193.4 162 64.8
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.4e-47 193.4 168 63.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-47 191.8 161 63.4
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 4.2e-47 191.8 161 63.4
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 5.5e-47 191.4 176 60.8
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.6e-44 182.6 140 67.1
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.4e-42 176.8 160 58.1
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.5e-41 172.2 143 60.8
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-40 169.1 154 61.7
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 9.4e-39 164.1 159 56.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 4.7e-38 161.8 144 58.3
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 8.0e-38 161.0 150 56.0
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 5.2e-37 158.3 144 54.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 57.2
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 57.2
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.6e-36 156.0 152 57.2
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 9.7e-36 154.1 133 58.6
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-34 150.6 144 54.9
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 1.1e-34 150.6 144 54.9
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.1e-34 150.6 144 54.9
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.1e-34 150.6 144 54.9
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-34 150.6 144 54.9
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.4e-34 150.2 151 55.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.4e-34 150.2 151 55.6
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.2e-33 147.1 155 52.9
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-32 143.7 144 52.8
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.2e-32 142.9 152 51.3
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 6.5e-32 141.4 132 53.8
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 4.0e-29 132.1 124 58.9
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.0e-25 119.8 161 42.9
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 7.7e-25 117.9 139 43.2
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 1.0e-24 117.5 146 43.8
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.9e-24 115.9 154 42.2
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.9e-24 115.9 137 44.5
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.9e-24 115.9 141 46.8
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 3.8e-24 115.5 144 41.7
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 5.0e-24 115.2 164 41.5
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 5.0e-24 115.2 176 39.8
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.0e-24 115.2 144 46.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 8.5e-24 114.4 166 42.8
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.5e-23 113.6 143 42.7
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-23 113.6 188 37.2
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.9e-23 113.2 133 44.4
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.2e-23 112.5 165 40.0
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 4.2e-23 112.1 185 39.5
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 4.2e-23 112.1 163 39.3
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 4.2e-23 112.1 184 41.3
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 5.5e-23 111.7 147 39.5
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 5.5e-23 111.7 183 39.9
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 5.5e-23 111.7 148 42.6
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 7.2e-23 111.3 145 43.4
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.4e-23 110.9 165 40.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.7e-22 109.4 162 38.9
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.6e-22 109.0 177 35.6
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.7e-22 108.6 135 43.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 8.0e-22 107.8 153 42.5
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 8.0e-22 107.8 153 39.2
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.0e-21 107.5 158 40.5
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-21 107.1 132 43.2
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.4e-21 107.1 164 40.2
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.8e-21 106.7 179 36.9
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.8e-21 106.7 148 40.5
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.8e-21 106.7 154 39.0
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 4.0e-21 105.5 144 40.3
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 4.0e-21 105.5 173 35.3
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 5.2e-21 105.1 152 40.1
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 5.2e-21 105.1 179 39.7
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 5.2e-21 105.1 157 37.6
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.8e-21 104.8 167 40.7
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.8e-21 104.8 168 40.5
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 6.8e-21 104.8 165 41.2
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 6.8e-21 104.8 147 41.5
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 6.8e-21 104.8 131 45.0
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 8.8e-21 104.4 123 43.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 8.8e-21 104.4 176 35.8
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 8.8e-21 104.4 131 45.0
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.5e-20 103.6 141 40.4
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.5e-20 103.6 141 40.4
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 151 37.7
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.5e-20 103.6 156 38.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 131 45.0
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.5e-20 103.6 160 40.6
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 2.0e-20 103.2 137 42.3
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.0e-20 103.2 154 40.9
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 2.0e-20 103.2 134 42.5
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.6e-20 102.8 157 39.5
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.6e-20 102.8 173 36.4
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.6e-20 102.8 148 39.2
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 3.4e-20 102.4 169 39.1
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.4e-20 102.1 183 37.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 4.4e-20 102.1 183 37.2
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 4.4e-20 102.1 162 38.9
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 5.7e-20 101.7 167 38.9
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.7e-20 101.7 146 40.4
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 5.7e-20 101.7 155 38.7
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 5.7e-20 101.7 163 37.4
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 7.5e-20 101.3 161 36.0
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 9.8e-20 100.9 171 37.4
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.3e-19 100.5 165 38.8
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.7e-19 100.1 145 36.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.7e-19 100.1 145 36.6
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.2e-19 99.8 150 40.0
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.2e-19 99.8 184 35.9
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 2.8e-19 99.4 136 41.2
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.8e-19 99.4 179 35.8
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.8e-19 99.4 139 39.6
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 3.7e-19 99.0 146 38.4
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.7e-19 99.0 176 35.8
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 3.7e-19 99.0 145 37.9
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 4.9e-19 98.6 156 37.8
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 6.3e-19 98.2 183 36.1
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.3e-19 98.2 132 41.7
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 8.3e-19 97.8 146 38.4
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 8.3e-19 97.8 172 36.6
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 8.3e-19 97.8 140 41.4
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.4e-18 97.1 142 40.8
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.8e-18 96.7 137 44.5
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.4e-18 96.3 167 37.1
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.4e-18 96.3 144 36.8
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.1e-18 95.9 139 38.8
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 4.1e-18 95.5 144 41.0
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.4e-18 95.1 182 35.2
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 5.4e-18 95.1 137 40.9
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 9.2e-18 94.4 172 34.9
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.2e-17 94.0 133 40.6
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.2e-17 94.0 172 34.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.6e-17 93.6 157 39.5
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.7e-17 92.8 143 39.9
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 3.5e-17 92.4 133 42.1
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 4.5e-17 92.0 148 38.5
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 4.5e-17 92.0 157 36.3
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.5e-17 92.0 136 40.4
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.9e-17 91.7 150 36.7
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 7.7e-17 91.3 136 39.7
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.0e-16 90.9 147 36.7
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.0e-16 90.9 136 38.2
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.7e-16 90.1 150 36.7
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.7e-16 90.1 136 37.5
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 2.9e-16 89.4 166 32.5
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.9e-16 89.4 145 39.3
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.9e-16 89.4 147 38.1
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 5.0e-16 88.6 151 36.4
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 8.6e-16 87.8 91 47.3
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.3e-15 85.5 122 41.0
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.3e-13 79.7 104 39.4
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 3.0e-13 79.3 191 30.9
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 6.8e-13 78.2 169 34.9
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.5e-12 77.0 101 45.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 3.4e-12 75.9 146 32.9
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.7e-09 66.2 111 34.2
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 2.7e-09 66.2 106 40.6
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 5.0e-08 62.0 65 53.8


User provided reference genes

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