Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.3e-268 927.9 513 100.0
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 3.0e-253 878.2 516 96.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-215 753.4 477 90.6
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.1e-166 589.7 491 75.4
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.2e-153 547.4 492 70.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.7e-147 526.9 493 69.8
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.6e-145 520.4 487 69.4
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.7e-144 516.9 487 68.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-129 466.8 413 67.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 9.6e-127 458.0 485 62.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-122 444.5 424 65.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-121 441.0 425 65.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 3.5e-121 439.5 423 64.5
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 8.7e-120 434.9 424 64.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.8e-118 429.9 424 65.3
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.6e-97 360.9 497 52.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.7e-86 323.2 475 50.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.3e-86 322.4 481 48.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.1e-85 320.1 452 50.2
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 5.5e-82 309.3 519 44.9
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 8.0e-81 305.4 519 41.8
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 6.8e-80 302.4 519 44.7
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.3e-78 295.8 452 48.9
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 5.4e-77 292.7 449 47.4
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.0e-76 290.8 519 44.7
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.7e-76 290.4 522 43.9
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 7.7e-76 288.9 451 47.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.2e-74 283.1 536 44.0
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.7e-73 280.4 509 44.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.8e-72 277.7 536 43.5
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.0e-71 274.2 536 42.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-71 273.5 459 47.5
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.4e-71 273.5 455 47.5
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.4e-71 273.5 524 43.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.7e-70 271.2 436 47.9
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.7e-70 270.0 536 40.9
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.9e-70 269.6 526 42.4
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 9.2e-69 265.4 511 40.9
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.6e-68 264.6 519 43.0
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.7e-68 263.8 513 43.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.7e-68 263.8 508 44.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 3.5e-68 263.5 517 43.5
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.5e-68 263.1 527 41.9
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.0e-67 259.6 512 40.6
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.0e-67 259.6 525 40.8
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 2.5e-66 257.3 529 40.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 4.3e-66 256.5 523 38.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 5.6e-66 256.1 525 38.9
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 3.6e-65 253.4 529 40.6
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.0e-64 250.0 530 41.1
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-63 248.4 506 39.1
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.4e-63 246.9 508 41.1
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.4e-63 246.5 526 37.3
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.5e-63 245.7 517 37.7
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 7.5e-63 245.7 494 40.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.2e-62 244.2 513 38.0
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.9e-62 243.8 532 37.2
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 4.9e-62 243.0 431 46.6
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.8e-61 241.1 507 41.6
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.8e-61 241.1 475 44.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.1e-61 240.0 506 36.6
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 7.0e-61 239.2 531 37.9
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 9.2e-61 238.8 522 37.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.0e-60 237.7 540 39.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.0e-59 233.8 515 39.4
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.1e-58 231.9 507 38.9
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.5e-58 230.7 521 38.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.3e-58 230.3 502 37.5
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 7.3e-58 229.2 542 38.0
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.8e-57 227.3 530 39.2
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 4.7e-57 226.5 511 37.4
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.2e-57 226.1 544 37.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 8.0e-57 225.7 531 39.4
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.0e-56 225.3 512 35.4
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.4e-56 224.9 456 38.2
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 3.1e-56 223.8 540 39.3
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.1e-56 223.8 543 37.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 4.0e-56 223.4 473 41.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 5.2e-56 223.0 488 39.3
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.9e-56 222.2 513 37.4
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.5e-55 221.5 517 37.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.0e-55 221.1 501 36.7
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.6e-55 220.7 516 38.4
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-55 220.7 513 36.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.5e-55 219.2 513 38.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 7.5e-55 219.2 505 36.2
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.7e-54 216.9 523 35.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.7e-54 216.9 540 39.6
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-53 214.9 513 37.2
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.2e-53 213.8 526 37.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.4e-53 213.0 520 35.8
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 5.4e-53 213.0 501 37.1
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 3.5e-52 210.3 531 35.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 5.0e-51 206.5 505 37.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.9e-50 204.5 552 35.3
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.5e-50 204.1 501 35.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.3e-50 203.8 509 36.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.2e-49 201.8 523 36.5
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.6e-49 201.4 508 34.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.7e-49 199.9 515 36.7
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.2e-48 196.4 440 39.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.9e-48 195.7 514 36.8
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.5e-47 194.9 522 34.1
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-47 194.9 479 37.8
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.7e-46 190.3 369 40.1
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 6.4e-46 189.5 532 37.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.4e-45 188.3 537 35.4
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.9e-45 188.0 478 39.5
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.1e-44 184.5 413 35.8
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.1e-44 184.5 524 31.7
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.6e-44 183.3 527 35.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.9e-43 180.3 528 33.9
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 3.9e-43 180.3 515 33.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 2.8e-41 174.1 514 31.9
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.8e-41 174.1 506 35.6
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 8.9e-40 169.1 445 35.3
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.2e-38 164.5 500 34.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.8e-38 163.7 437 35.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.1e-37 162.2 482 32.0
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.1e-37 162.2 481 35.6
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.4e-37 161.0 413 35.6
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.1e-37 160.2 505 33.5
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 9.2e-37 159.1 446 37.2
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.9e-34 151.4 529 30.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.1e-33 147.9 451 34.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.1e-33 147.9 488 31.4
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.7e-33 146.7 408 32.8
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.7e-33 146.7 459 34.6
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.2e-31 142.1 454 34.8
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.9e-29 134.8 146 53.4
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-27 127.9 265 37.4
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 5.6e-26 123.2 282 36.9
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 5.6e-26 123.2 416 30.5
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.8e-25 120.9 416 30.3
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-24 118.6 416 30.0
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.1e-24 117.5 114 57.0
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.9e-24 116.3 352 31.5
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 6.9e-24 116.3 444 29.3
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.2e-23 115.5 206 42.7
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.9e-23 112.5 444 30.9
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-22 111.3 114 60.5
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.2e-22 111.3 272 34.2
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.9e-21 108.2 367 30.5
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.9e-20 102.8 179 39.7
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.3e-19 101.3 377 32.4
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.5e-18 98.6 520 26.7
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 7.4e-18 96.3 323 28.5
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 7.4e-18 96.3 98 54.1
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.1e-17 94.7 501 29.3
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.4e-16 91.3 204 35.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.1e-16 90.9 511 26.0
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.3e-16 90.1 390 30.5
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.6e-15 87.8 107 42.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.8e-15 86.7 106 42.5
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-13 82.4 46 82.6
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.4e-13 81.3 388 25.3
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.2e-13 80.5 107 42.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 7.1e-13 79.7 150 41.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.6e-12 78.6 107 42.1
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 2.7e-12 77.8 140 40.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 3.5e-12 77.4 59 62.7
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.8e-11 75.1 99 37.4
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 3.0e-11 74.3 72 47.2
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.9e-11 73.9 113 37.2
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.1e-10 72.4 103 38.8
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.5e-10 72.0 103 38.8
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.6e-10 70.1 241 30.7
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.2e-09 66.2 277 26.4
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.4e-08 64.7 67 49.3
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.2e-07 62.4 100 39.0
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-06 58.2 233 27.0


User provided reference genes

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