Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.8e-258 894.8 470 100.0
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.4e-257 892.5 470 99.6
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 4.7e-253 877.5 470 97.7
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 7.4e-251 870.2 471 97.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.4e-249 865.1 496 93.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 5.0e-247 857.4 469 95.5
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.2e-246 854.7 469 95.5
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.5e-243 845.9 469 94.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 4.8e-242 840.9 469 94.5
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.3e-242 840.5 469 94.0
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 4.1e-241 837.8 469 93.6
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 3.5e-240 834.7 469 93.6
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.5e-238 829.3 469 92.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 2.7e-237 825.1 468 93.4
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 3.4e-235 818.1 470 90.9
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.4e-235 817.8 469 90.8
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 5.4e-225 784.3 469 88.1
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.3e-210 736.5 470 82.3
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.6e-208 728.0 409 93.6
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 5.8e-195 684.5 467 77.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 7.1e-193 677.6 442 77.8
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 4.6e-192 674.9 464 75.4
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 4.6e-192 674.9 465 75.5
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 5.1e-191 671.4 472 74.4
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.5e-190 669.8 475 74.7
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 3.3e-190 668.7 471 73.2
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.6e-189 665.2 472 75.6
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.8e-188 662.9 444 77.7
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 4.0e-188 661.8 465 75.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.2e-187 660.2 466 74.2
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.8e-187 657.9 476 73.5
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.3e-186 656.8 470 74.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.2e-186 656.0 448 76.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.2e-186 656.0 462 73.2
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 2.9e-186 655.6 477 73.0
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 6.4e-186 654.4 462 73.2
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 6.4e-186 654.4 470 74.3
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 8.4e-186 654.1 469 74.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-185 653.7 444 76.4
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.1e-185 653.7 471 73.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.9e-185 652.9 473 72.7
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.4e-185 652.5 481 73.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 5.4e-185 651.4 453 74.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 5.4e-185 651.4 442 76.9
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 7.1e-185 651.0 472 72.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 7.1e-185 651.0 461 74.4
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.2e-184 650.2 473 72.1
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.6e-184 649.8 436 77.8
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.6e-184 649.8 481 73.2
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.3e-183 646.0 469 74.4
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 3.0e-183 645.6 426 78.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.1e-183 644.8 470 74.3
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 5.1e-183 644.8 472 71.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 6.6e-183 644.4 434 77.9
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 8.7e-183 644.0 466 72.3
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.1e-182 643.7 448 75.4
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.1e-182 643.7 463 72.8
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-182 643.3 473 72.9
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.5e-182 642.5 493 70.2
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.5e-182 642.5 502 70.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.3e-182 642.1 471 72.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 3.3e-182 642.1 473 72.9
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 5.6e-182 641.3 467 72.8
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 5.6e-182 641.3 444 74.8
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.1e-181 639.4 468 73.5
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.8e-181 639.0 462 72.1
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 3.6e-181 638.6 444 75.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 3.6e-181 638.6 468 73.1
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 3.6e-181 638.6 464 70.9
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.1e-181 637.5 442 74.2
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.4e-180 636.7 466 73.0
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.8e-180 636.3 478 71.5
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.8e-180 636.3 464 72.6
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 3.1e-180 635.6 468 72.9
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 9.0e-180 634.0 436 76.1
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.2e-179 633.6 471 72.0
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.2e-179 633.6 464 72.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 5.8e-179 631.3 442 74.9
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 9.9e-179 630.6 438 75.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 9.9e-179 630.6 461 70.7
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 4.9e-178 628.2 464 70.7
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 6.4e-178 627.9 462 72.5
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 6.4e-178 627.9 465 71.6
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.2e-176 623.6 460 72.0
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 5.1e-175 618.2 399 80.5
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 6.7e-175 617.8 409 78.5
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.1e-173 612.8 445 73.7
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.1e-172 610.5 479 69.1
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.4e-172 609.4 456 70.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 6.9e-172 607.8 459 70.2
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 3.2e-169 599.0 461 70.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 3.5e-168 595.5 484 65.9
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.1e-166 590.5 438 71.5
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 8.2e-165 584.3 449 68.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.4e-164 583.6 423 71.6
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.4e-161 573.5 549 59.7
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.2e-160 570.5 422 73.9
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.1e-160 569.7 426 72.3
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.0e-159 567.4 398 75.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.1e-156 555.4 413 73.6
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.1e-153 547.4 446 66.1
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.6e-152 542.0 409 70.7
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 4.6e-152 542.0 423 67.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.0e-151 540.8 385 71.4
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 6.7e-151 538.1 390 74.6
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 7.4e-134 481.5 451 58.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.2e-128 464.2 339 73.7
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.6e-128 463.8 360 66.7
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.0e-126 456.8 435 62.3
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.3e-126 456.1 472 57.6
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 5.3e-124 448.7 329 69.3
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 5.0e-122 442.2 430 58.1
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 7.2e-121 438.3 434 56.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 3.6e-112 409.5 317 70.7
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 2.9e-101 373.2 388 56.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.2e-96 357.8 251 75.3
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.9e-77 292.7 202 75.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.7e-74 282.0 195 74.4
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.1e-73 281.6 231 67.1
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.5e-73 280.4 235 66.0
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.1e-67 260.8 204 67.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.9e-66 256.5 218 61.5
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.5e-57 227.3 147 75.5
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.3e-57 226.5 458 37.3
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.1e-56 222.2 182 67.6
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.5e-44 184.1 122 71.3
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.0e-38 164.5 142 64.1
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.7e-38 162.5 137 65.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.8e-32 144.1 131 66.4
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 8.2e-32 142.5 131 65.6
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 8.2e-32 142.5 131 65.6
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 8.2e-32 142.5 131 65.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-31 142.1 131 65.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.4e-31 141.7 131 64.9
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.1e-31 140.2 131 64.9
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 5.3e-31 139.8 103 68.9
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 9.1e-31 139.0 264 38.3
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.0e-29 135.6 137 62.8
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.7e-29 134.8 158 53.8
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 3.8e-29 133.7 133 63.2
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.5e-28 129.8 264 36.4
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.6e-27 127.1 103 65.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.8e-26 122.5 130 56.2
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 3.7e-24 117.1 101 63.4
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 7.0e-23 112.8 62 88.7
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 8.5e-21 105.9 111 60.4
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 5.5e-20 103.2 108 62.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 5.5e-20 103.2 121 52.9
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 9.4e-20 102.4 100 58.0
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.2e-19 102.1 126 54.0
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-19 101.3 131 51.9
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 3.0e-18 97.4 72 76.4
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 7.4e-17 92.8 84 58.3
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.2e-11 75.5 46 69.6
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.2e-11 75.5 46 69.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 3.6e-11 73.9 75 56.0
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 4.7e-11 73.6 103 48.5
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.0e-10 72.4 166 35.5
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.8e-10 71.6 71 52.1
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.8e-10 71.6 71 52.1
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.8e-10 71.6 75 60.0
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.3e-10 71.2 49 81.6
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.5e-09 68.6 177 31.6
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 3.4e-09 67.4 88 52.3
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.7e-08 63.9 103 42.7
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.8e-08 63.5 46 76.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 1.8e-07 61.6 48 70.8
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 1.2e-06 58.9 83 41.0
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.6e-06 58.5 39 76.9


User provided reference genes

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