Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 2.6e-85 318.9 189 100.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 9.8e-77 290.4 190 90.0
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 9.8e-77 290.4 190 90.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.5e-64 250.0 189 81.5
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 7.3e-64 247.7 170 88.8
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.2e-61 240.4 188 79.3
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 3.5e-58 228.8 189 76.7
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.0e-53 213.0 191 72.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 5.8e-53 211.5 188 72.9
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 3.5e-50 202.2 172 82.0
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 8.9e-46 187.6 189 66.1
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 6.9e-38 161.4 190 61.6
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.3e-36 157.1 194 59.8
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 4.9e-36 155.2 194 59.3
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 6.0e-34 148.3 168 67.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.3e-31 140.6 191 56.0
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.2e-29 134.0 161 60.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.1e-27 124.8 191 48.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.2e-26 124.0 189 49.7
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 6.2e-23 111.7 71 87.3
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 6.2e-23 111.7 120 61.7
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.8e-17 93.6 181 43.1
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.1e-15 86.7 106 56.6
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.8e-15 86.3 128 50.0
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.1e-14 84.3 113 53.1
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 5.3e-14 82.0 128 47.7
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-13 80.9 120 48.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.5e-13 80.5 107 53.3
BcaB01g03781 Brassica carinata HOM05D004973 ORTHO05D006119 2.6e-13 79.7 65 69.2
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 2.6e-13 79.7 125 48.0
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 2.6e-13 79.7 94 58.5
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.6e-13 79.7 120 48.3
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.6e-13 79.7 119 48.7
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 3.4e-13 79.3 117 47.9
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 3.4e-13 79.3 86 59.3
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.5e-13 79.0 156 41.0
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.5e-13 79.0 117 47.9
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 4.5e-13 79.0 167 43.1
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.5e-13 79.0 142 43.7
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 4.5e-13 79.0 173 41.0
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.8e-13 78.6 120 47.5
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 7.6e-13 78.2 106 51.9
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 7.6e-13 78.2 113 46.9
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.7e-12 77.0 113 47.8
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.7e-12 77.0 110 49.1
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.7e-12 77.0 129 45.7
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.2e-12 76.6 117 47.9
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.9e-12 76.3 139 46.8
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 3.8e-12 75.9 117 48.7
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.1e-11 74.3 98 53.1
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.1e-11 74.3 177 40.1
BcaB02g09290 Brassica carinata HOM05D004973 ORTHO05D006119 1.4e-11 73.9 160 41.2
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.4e-11 73.9 110 48.2
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 2.5e-11 73.2 107 47.7
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.2e-11 72.8 87 51.7
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 4.2e-11 72.4 77 55.8
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 5.5e-11 72.0 109 48.6
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 9.3e-11 71.2 111 49.5
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 9.3e-11 71.2 97 48.5
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 9.3e-11 71.2 74 58.1
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.6e-10 70.5 148 41.9
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.6e-10 70.5 175 40.0
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.6e-10 70.5 124 43.5
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.6e-10 70.5 111 45.9
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.1e-10 70.1 162 40.7
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.1e-10 70.1 134 43.3
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.5e-10 69.3 66 60.6
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.5e-10 69.3 165 38.2
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.5e-10 69.3 140 39.3
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 4.6e-10 68.9 97 50.5
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.6e-10 68.9 169 37.3
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 4.6e-10 68.9 107 46.7
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 4.6e-10 68.9 122 41.0
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.1e-10 68.6 128 41.4
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.9e-10 68.2 105 47.6
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 7.9e-10 68.2 167 38.9
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.3e-09 67.4 122 44.3
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.3e-09 67.4 75 54.7
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.3e-09 67.4 73 56.2
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.3e-09 67.4 115 42.6
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.3e-09 67.4 113 46.0
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.8e-09 67.0 123 41.5
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 1.8e-09 67.0 87 51.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.8e-09 67.0 108 46.3
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.3e-09 66.6 161 39.1
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.3e-09 66.6 161 37.9
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.3e-09 66.6 128 43.0
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.3e-09 66.6 165 38.8
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 3.0e-09 66.2 152 42.1
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 3.0e-09 66.2 126 40.5
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 5.1e-09 65.5 141 41.1
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 5.1e-09 65.5 160 38.8
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 6.7e-09 65.1 173 35.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 6.7e-09 65.1 125 40.8
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 8.7e-09 64.7 118 39.8
BolC4t22663H Brassica oleracea HOM05D004973 ORTHO05D006119 8.7e-09 64.7 86 58.1
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.7e-09 64.7 173 41.0
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 8.7e-09 64.7 123 46.3
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.1e-08 64.3 179 36.3
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.5e-08 63.9 172 38.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.9e-08 63.5 121 43.0
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.9e-08 63.5 187 35.8
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.9e-08 63.5 117 45.3
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 2.5e-08 63.2 137 41.6
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.5e-08 63.2 124 43.5
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 5.7e-08 62.0 169 37.9
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.4e-08 61.6 173 40.5
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 7.4e-08 61.6 155 34.8
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 7.4e-08 61.6 90 42.2
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 7.4e-08 61.6 99 44.4
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.3e-07 60.8 138 37.7
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.6e-07 60.5 97 48.5
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.6e-07 60.5 82 45.1
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.6e-07 60.5 70 50.0
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 2.8e-07 59.7 111 39.6
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 3.7e-07 59.3 55 56.4
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 3.7e-07 59.3 105 42.9
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 4.8e-07 58.9 163 33.7
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 4.8e-07 58.9 176 35.8
Aa31LG5G22620 Aethionema arabicum HOM05D004973 ORTHO05D006119 8.2e-07 58.2 99 44.4
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 8.2e-07 58.2 117 41.0
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.1e-06 57.8 121 38.8
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 4.1e-06 55.8 157 27.4
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 5.3e-06 55.5 56 55.4
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 9.0e-06 54.7 171 33.9


User provided reference genes

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