Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p28250 Brassica napus HOM05D002801 ORTHO05D003002 5.2e-153 544.3 260 100.0
BcaC02g07566 Brassica carinata HOM05D002801 ORTHO05D003002 3.4e-56 222.6 143 82.5
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 8.8e-52 208.0 148 78.4
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 2.6e-48 196.4 142 76.1
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 2.6e-48 196.4 142 76.1
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 5.9e-48 195.3 142 75.4
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 5.9e-48 195.3 142 75.4
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 8.5e-47 191.4 147 72.8
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 8.5e-47 191.4 147 71.4
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 1.9e-46 190.3 144 70.1
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 5.2e-44 182.2 143 72.7
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 2.6e-43 179.9 174 60.9
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 5.7e-43 178.7 147 69.4
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 5.9e-40 168.7 147 68.0
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 6.5e-39 165.2 146 66.4
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 4.2e-38 162.5 147 64.6
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 1.5e-30 137.5 158 57.0
BraA04t18309Z Brassica rapa HOM05D002801 ORTHO05D003002 4.7e-29 132.5 67 91.0
C04p65610 Brassica napus HOM05D002801 ORTHO05D003002 4.9e-26 122.5 70 84.3
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 1.8e-25 120.6 63 90.5
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 1.8e-25 120.6 65 89.2
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 1.8e-25 120.6 65 89.2
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 4.1e-25 119.4 64 89.1
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 9.2e-25 118.2 65 87.7
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 9.2e-25 118.2 65 87.7
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 9.2e-25 118.2 65 87.7
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 9.2e-25 118.2 65 87.7
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.2e-24 117.9 63 87.3
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 1.2e-24 117.9 64 87.5
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 1.6e-24 117.5 66 81.8
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 2.0e-24 117.1 66 84.8
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.0e-24 117.1 64 87.5
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 2.0e-24 117.1 64 87.5
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 2.0e-24 117.1 64 87.5
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 2.7e-24 116.7 65 87.7
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 2.7e-24 116.7 63 88.9
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 2.7e-24 116.7 63 87.3
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 3.5e-24 116.3 64 87.5
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 3.5e-24 116.3 64 87.5
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 3.5e-24 116.3 64 87.5
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 3.5e-24 116.3 64 87.5
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 3.5e-24 116.3 63 88.9
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 3.5e-24 116.3 64 87.5
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 4.5e-24 115.9 65 86.2
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 4.5e-24 115.9 65 86.2
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 4.5e-24 115.9 64 85.9
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 4.5e-24 115.9 64 87.5
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 4.5e-24 115.9 63 87.3
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 4.5e-24 115.9 65 86.2
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 4.5e-24 115.9 63 87.3
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 5.9e-24 115.5 66 80.3
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 5.9e-24 115.5 64 85.9
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 7.8e-24 115.2 64 85.9
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 7.8e-24 115.2 64 85.9
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 7.8e-24 115.2 64 84.4
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 1.0e-23 114.8 64 84.4
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 1.0e-23 114.8 64 84.4
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 1.0e-23 114.8 64 85.9
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 1.0e-23 114.8 64 84.4
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 1.0e-23 114.8 63 85.7
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 1.3e-23 114.4 63 87.3
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 1.7e-23 114.0 64 84.4
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 1.7e-23 114.0 65 84.6
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 1.7e-23 114.0 64 84.4
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 1.7e-23 114.0 64 85.9
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 1.7e-23 114.0 64 85.9
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 2.3e-23 113.6 63 85.7
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 2.3e-23 113.6 63 84.1
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 2.3e-23 113.6 63 84.1
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 2.3e-23 113.6 63 84.1
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 2.3e-23 113.6 63 84.1
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 2.3e-23 113.6 63 85.7
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 2.3e-23 113.6 64 84.4
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 2.9e-23 113.2 64 84.4
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 2.9e-23 113.2 64 84.4
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 2.9e-23 113.2 64 84.4
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 3.8e-23 112.8 65 81.5
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 3.8e-23 112.8 64 85.9
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 3.8e-23 112.8 63 85.7
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 3.8e-23 112.8 64 84.4
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 3.8e-23 112.8 64 84.4
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 5.0e-23 112.5 63 85.7
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 6.6e-23 112.1 63 85.7
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 6.6e-23 112.1 65 83.1
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 6.6e-23 112.1 63 82.5
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 1.5e-22 110.9 63 85.7
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 1.9e-22 110.5 65 81.5
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.9e-22 110.5 63 82.5
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 2.5e-22 110.2 67 80.6
Zm00001eb058920 Zea mays HOM05D002801 ORTHO05D003002 2.5e-22 110.2 64 81.2
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 2.5e-22 110.2 62 85.5
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 3.3e-22 109.8 61 85.2
TAR633G0396 Trochodendron aralioides HOM05D002801 ORTHO05D003002 5.6e-22 109.0 61 85.2
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 5.6e-22 109.0 61 85.2
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 7.3e-22 108.6 65 80.0
Dinv35783 Davidia involucrata HOM05D002801 ORTHO05D003002 9.5e-22 108.2 68 80.9
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 9.5e-22 108.2 74 73.0
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 1.6e-21 107.5 61 85.2
MBI11_g28438_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 2.1e-21 107.1 61 83.6
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 2.8e-21 106.7 61 83.6
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 3.6e-21 106.3 63 82.5
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 3.6e-21 106.3 62 82.3
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 4.7e-21 105.9 63 84.1
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 4.7e-21 105.9 63 84.1
Os03g0773100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 6.1e-21 105.5 64 78.1
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 1.0e-20 104.8 63 84.1
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 2.3e-20 103.6 64 81.2
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 2.3e-20 103.6 64 81.2
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 2.3e-20 103.6 64 81.2
CSS0037052 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 3.0e-20 103.2 65 81.5
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 5.2e-20 102.4 60 81.7
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 6.8e-20 102.1 71 74.6
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.2e-19 101.3 60 80.0
CBR_g26407 Chara braunii HOM05D002801 ORTHO05D003002 2.6e-19 100.1 64 71.9
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 4.4e-19 99.4 63 79.4
SMO116G0270 Selaginella moellendorffii HOM05D002801 ORTHO05D003002 5.8e-19 99.0 63 73.0
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 3.7e-18 96.3 56 83.9
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 6.4e-18 95.5 63 79.4
SHI12444 Sapria himalayana HOM05D002801 ORTHO05D003002 1.1e-17 94.7 63 74.6
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 5.4e-17 92.4 61 77.0
COL.COLO4_10010 Corchorus olitorius HOM05D002801 ORTHO05D003002 1.6e-16 90.9 168 40.5
Mapoly0009s0010 Marchantia polymorpha HOM05D002801 ORTHO05D003002 2.7e-16 90.1 82 56.1
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.3e-15 87.8 142 43.7
CSS0030915 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 1.8e-12 77.4 86 53.5
Gorai.002G247700 Gossypium raimondii HOM05D002801 ORTHO05D003002 4.0e-12 76.3 169 36.1
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 6.8e-12 75.5 149 38.3
AUR62044224 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.7e-10 70.9 83 50.6
HanXRQChr17g0568771 Helianthus annuus HOM05D002801 ORTHO05D003002 1.2e-08 64.7 37 83.8
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 6.0e-08 62.4 182 31.9
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 7.8e-08 62.0 34 85.3
Cfa018821 Carpinus fangiana HOM05D000128 ORTHO05D000059 7.8e-08 62.0 57 59.6
MCO07G427 Micromonas commoda HOM05D002801 ORTHO05D003002 1.0e-07 61.6 77 41.6
BolC4t28053H Brassica oleracea HOM05D002801 ORTHO05D003002 3.0e-07 60.1 47 70.2
BolC4t28051H Brassica oleracea HOM05D002801 ORTHO05D003002 6.6e-07 58.9 31 90.3


User provided reference genes

Program Settings