Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p27800 Brassica napus HOM05D003607 ORTHO05D004049 9.7e-53 209.9 109 100.0
BraA04t18272Z Brassica rapa HOM05D003607 ORTHO05D004049 9.7e-53 209.9 109 100.0
BcaC02g07616 Brassica carinata HOM05D003607 ORTHO05D004049 2.0e-45 185.7 109 92.7
BolC4t28008H Brassica oleracea HOM05D003607 ORTHO05D004049 2.0e-45 185.7 109 92.7
BcaB06g28927 Brassica carinata HOM05D003607 ORTHO05D004049 2.2e-44 182.2 109 91.7
BcaB02g09364 Brassica carinata HOM05D003607 ORTHO05D004049 1.2e-42 176.4 109 88.1
A05p09560 Brassica napus HOM05D003607 ORTHO05D004049 1.2e-42 176.4 109 88.1
BraA05t19909Z Brassica rapa HOM05D003607 ORTHO05D004049 1.2e-42 176.4 109 88.1
BcaC02g11742 Brassica carinata HOM05D003607 ORTHO05D004049 3.5e-42 174.9 109 87.2
C04p11820 Brassica napus HOM05D003607 ORTHO05D004049 3.5e-42 174.9 109 87.2
BolC4t22831H Brassica oleracea HOM05D003607 ORTHO05D004049 3.5e-42 174.9 109 87.2
Thhalv10017131m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 1.3e-41 172.9 109 88.1
BNapus_Darmor_BZH_scaffold_239p00020 Brassica napus HOM05D003607 ORTHO05D004049 2.2e-41 172.2 90 98.9
Sp4g18520 Schrenkiella parvula HOM05D003607 ORTHO05D004049 2.9e-41 171.8 109 87.2
AL4G32410 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 8.5e-41 170.2 109 86.2
Carub.0004s1805 Capsella rubella HOM05D003607 ORTHO05D004049 8.5e-41 170.2 109 86.2
CARHR130570 Cardamine hirsuta HOM05D003607 ORTHO05D004049 8.5e-41 170.2 109 85.3
AT2G36300 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 1.9e-40 169.1 109 85.3
THA.LOC104804679 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 4.2e-40 167.9 109 84.4
Thhalv10010984m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 2.7e-39 165.2 109 84.4
Carub.0005s1924 Capsella rubella HOM05D003607 ORTHO05D004049 3.6e-39 164.9 109 84.4
AT3G52760 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 6.1e-39 164.1 109 84.4
Aa31LG5G21430 Aethionema arabicum HOM05D003607 ORTHO05D004049 8.0e-39 163.7 109 82.6
AL5G33530 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 1.4e-38 162.9 109 83.5
THA.LOC104823483 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 1.4e-38 162.9 109 82.6
CARHR162640 Cardamine hirsuta HOM05D003607 ORTHO05D004049 2.3e-38 162.2 109 83.5
C04p65300 Brassica napus HOM05D003607 ORTHO05D004049 3.0e-38 161.8 84 100.0
Cpa.g.sc5.37 Carica papaya HOM05D003607 ORTHO05D004049 2.6e-37 158.7 109 77.1
Sp5g09570 Schrenkiella parvula HOM05D003607 ORTHO05D004049 2.6e-37 158.7 109 82.6
Gohir.D01G196500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 7.5e-37 157.1 109 76.1
Gorai.002G240700 Gossypium raimondii HOM05D003607 ORTHO05D004049 7.5e-37 157.1 109 76.1
Gohir.A01G207100 Gossypium hirsutum HOM05D003607 ORTHO05D004049 9.7e-37 156.8 109 75.2
MELO3C009463.2 Cucumis melo HOM05D003607 ORTHO05D004049 1.7e-36 156.0 109 78.9
Sed0018362 Sechium edule HOM05D003607 ORTHO05D004049 1.7e-36 156.0 109 78.9
FAN05G4077 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.8e-36 155.2 109 78.9
Gohir.D01G128200 Gossypium hirsutum HOM05D003607 ORTHO05D004049 3.7e-36 154.8 110 77.3
Gorai.002G158800 Gossypium raimondii HOM05D003607 ORTHO05D004049 3.7e-36 154.8 110 77.3
FAN02G1747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.8e-36 154.5 109 78.0
FAN05G2511 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.8e-36 154.5 109 78.0
FAN14G5030 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.8e-36 154.5 109 78.0
Potri.004G190800 Populus trichocarpa HOM05D003607 ORTHO05D004049 6.3e-36 154.1 109 78.0
Sabra09G0120500 Salix brachista HOM05D003607 ORTHO05D004049 8.2e-36 153.7 109 77.1
RcHm_v2.0_Chr3g0472991 Rosa chinensis HOM05D003607 ORTHO05D004049 1.4e-35 152.9 109 77.1
Haze_19593 Corylus avellana HOM05D003607 ORTHO05D004049 4.1e-35 151.4 109 77.1
Gohir.A01G138500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 4.1e-35 151.4 110 76.4
Manes.08G024200 Manihot esculenta HOM05D003607 ORTHO05D004049 4.1e-35 151.4 109 76.1
Sed0001726 Sechium edule HOM05D003607 ORTHO05D004049 5.3e-35 151.0 109 76.1
Cfa016592 Carpinus fangiana HOM05D003607 ORTHO05D004049 1.2e-34 149.8 109 76.1
Sabra04G0127600 Salix brachista HOM05D003607 ORTHO05D004049 2.0e-34 149.1 109 76.1
TWI74G0563 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 2.7e-34 148.7 109 74.3
Atru.chr8.1565 Acer truncatum HOM05D003607 ORTHO05D004049 3.5e-34 148.3 109 75.2
Potri.009G152600 Populus trichocarpa HOM05D003607 ORTHO05D004049 3.5e-34 148.3 109 74.3
Ciclev10012570m.g Citrus clementina HOM05D003607 ORTHO05D004049 1.0e-33 146.7 109 74.3
CANSAT80G1935 Cannabis sativa HOM05D003607 ORTHO05D004049 1.7e-33 146.0 109 76.1
CiPaw.10G008300 Carya illinoinensis HOM05D003607 ORTHO05D004049 1.7e-33 146.0 109 74.3
MD12G1023700 Malus domestica HOM05D003607 ORTHO05D004049 1.7e-33 146.0 109 74.3
MD14G1020900 Malus domestica HOM05D003607 ORTHO05D004049 1.7e-33 146.0 109 74.3
TWI53G1341 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 1.7e-33 146.0 109 72.5
Prupe.7G112800 Prunus persica HOM05D003607 ORTHO05D004049 3.8e-33 144.8 109 73.4
Lalb_Chr01g0018221 Lupinus albus HOM05D003607 ORTHO05D004049 8.5e-33 143.7 109 73.4
CiPaw.09G012700 Carya illinoinensis HOM05D003607 ORTHO05D004049 2.5e-32 142.1 109 71.6
Glyma.03G194400 Glycine max HOM05D003607 ORTHO05D004049 3.2e-32 141.7 109 75.2
Glyma.19G194200 Glycine max HOM05D003607 ORTHO05D004049 3.2e-32 141.7 109 75.2
QL07p039292 Quercus lobata HOM05D003607 ORTHO05D004049 7.2e-32 140.6 108 71.3
Lj1g0001702 Lotus japonicus HOM05D003607 ORTHO05D004049 9.4e-32 140.2 109 71.6
Medtr7g104430 Medicago truncatula HOM05D003607 ORTHO05D004049 3.6e-31 138.3 109 72.5
VMungo1383G3486 Vigna mungo HOM05D003607 ORTHO05D004049 3.6e-31 138.3 109 72.5
Ca_08996_v3 Cicer arietinum L. HOM05D003607 ORTHO05D004049 4.7e-31 137.9 109 72.5
TPR.G19550 Trifolium pratense HOM05D003607 ORTHO05D004049 8.0e-31 137.1 109 71.6
Lsat_1_v5_gn_0_7620 Lactuca sativa HOM05D003607 ORTHO05D004049 1.8e-30 136.0 107 70.1
Lj4C706T9 Lonicera japonica HOM05D003607 ORTHO05D004049 6.8e-30 134.0 109 67.0
Lj7A388T89 Lonicera japonica HOM05D003607 ORTHO05D004049 6.8e-30 134.0 109 67.0
CSS0022022 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 8.8e-30 133.7 109 65.1
DCAR_013921 Daucus carota HOM05D003607 ORTHO05D004049 8.8e-30 133.7 109 67.0
DCAR_013922 Daucus carota HOM05D003607 ORTHO05D004049 8.8e-30 133.7 109 67.0
DCAR_032378 Daucus carota HOM05D003607 ORTHO05D004049 8.8e-30 133.7 109 67.0
ClCG10G019070 Citrullus lanatus HOM05D003607 ORTHO05D004049 1.2e-29 133.3 93 78.5
CsaV3_3G037170 Cucumis sativus L. HOM05D003607 ORTHO05D004049 1.2e-29 133.3 93 78.5
Dinv11849 Davidia involucrata HOM05D003607 ORTHO05D004049 1.5e-29 132.9 109 65.1
TAR633G2199 Trochodendron aralioides HOM05D003607 ORTHO05D004049 1.5e-29 132.9 109 67.9
vmacro10304 Vaccinium macrocarpon HOM05D003607 ORTHO05D004049 1.5e-29 132.9 109 66.1
Hma1.2p1_0802F.1_g220470 Hydrangea macrophylla HOM05D003607 ORTHO05D004049 2.0e-29 132.5 109 65.1
DCAR_028954 Daucus carota HOM05D003607 ORTHO05D004049 2.6e-29 132.1 109 67.0
HanXRQChr08g0217791 Helianthus annuus HOM05D003607 ORTHO05D004049 3.4e-29 131.7 109 66.1
Phvul.001G189100 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 3.4e-29 131.7 109 69.7
COL.COLO4_29767 Corchorus olitorius HOM05D003607 ORTHO05D004049 7.5e-29 130.6 92 71.7
DCAR_032379 Daucus carota HOM05D003607 ORTHO05D004049 7.5e-29 130.6 109 66.1
Duzib093G0509 Durio zibethinus HOM05D003607 ORTHO05D004049 9.8e-29 130.2 93 74.2
RcHm_v2.0_Chr3g0491231 Rosa chinensis HOM05D003607 ORTHO05D004049 1.3e-28 129.8 109 67.0
MSTRG.9085 Avicennia marina HOM05D003607 ORTHO05D004049 1.7e-28 129.4 109 64.2
Duzib106G1766 Durio zibethinus HOM05D000444 ORTHO05D004049 2.2e-28 129.0 92 71.7
Oeu025590.1 Olea europaea HOM05D003607 ORTHO05D004049 2.8e-28 128.6 109 64.2
TAR369G0187 Trochodendron aralioides HOM05D003607 ORTHO05D004049 2.8e-28 128.6 109 67.0
Duzib128G1249 Durio zibethinus HOM05D003607 ORTHO05D004049 4.8e-28 127.9 93 72.0
Migut.F00909 Erythranthe guttata HOM05D003607 ORTHO05D004049 4.8e-28 127.9 109 62.4
Manes.09G056401 Manihot esculenta HOM05D003607 ORTHO05D004049 6.3e-28 127.5 92 75.0
Sopen11g003000 Solanum pennellii HOM05D003607 ORTHO05D004049 6.3e-28 127.5 109 64.2
PGSC0003DMG400019486 Solanum tuberosum HOM05D003607 ORTHO05D004049 6.3e-28 127.5 109 64.2
SalBow6G2765 Salvia bowleyana HOM05D003607 ORTHO05D004049 8.3e-28 127.1 109 64.2
MSTRG.27534 Avicennia marina HOM05D003607 ORTHO05D004049 1.1e-27 126.7 109 60.6
Nitab4.5_0012135g0010 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.1e-27 126.7 109 63.3
HPP92_012048 Vanilla planifolia HOM05D003607 ORTHO05D004049 1.1e-27 126.7 109 64.2
GSVIVG01033828001 Vitis vinifera HOM05D003607 ORTHO05D004049 1.1e-27 126.7 109 66.1
CAN.G1513.4 Capsicum annuum HOM05D003607 ORTHO05D004049 1.4e-27 126.3 109 63.3
Cc02_g09790 Coffea canephora HOM05D003607 ORTHO05D004049 1.8e-27 125.9 109 62.4
PSO210G3326 Papaver somniferum HOM05D003607 ORTHO05D004049 1.8e-27 125.9 109 64.2
Solyc05g055300.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 1.8e-27 125.9 109 64.2
Sopen05g033740 Solanum pennellii HOM05D003607 ORTHO05D004049 1.8e-27 125.9 109 64.2
PGSC0003DMG400023389 Solanum tuberosum HOM05D003607 ORTHO05D004049 1.8e-27 125.9 109 64.2
SGA_v2.0_scaffold62G21343 Striga asiatica HOM05D003607 ORTHO05D004049 1.8e-27 125.9 106 63.2
FAN09G3360 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.4e-27 125.6 92 75.0
MBI01_g04060_MAGBIO Magnolia biondii HOM05D003607 ORTHO05D004049 2.4e-27 125.6 109 65.1
Nitab4.5_0001027g0170 Nicotiana tabacum HOM05D003607 ORTHO05D004049 2.4e-27 125.6 109 64.2
SGA_v2.0_scaffold13G06486 Striga asiatica HOM05D001901 ORTHO05D004049 2.4e-27 125.6 109 63.3
FAN23G0012 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.1e-27 124.8 109 63.3
TAR623G0614 Trochodendron aralioides HOM05D003607 ORTHO05D004049 4.1e-27 124.8 109 63.3
Aqoxy4G02802 Aquilegia oxysepala HOM05D003607 ORTHO05D004049 5.4e-27 124.4 109 63.3
PSO541G0274 Papaver somniferum HOM05D003607 ORTHO05D004049 5.4e-27 124.4 109 63.3
PSO675G0532 Papaver somniferum HOM05D003607 ORTHO05D004049 5.4e-27 124.4 109 63.3
FAN19G1909 Fragaria x ananassa HOM05D003607 ORTHO05D004049 9.1e-27 123.6 109 62.4
Nitab4.5_0002662g0040 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.6e-26 122.9 109 62.4
PSO339G5446 Papaver somniferum HOM05D003607 ORTHO05D004049 1.6e-26 122.9 107 62.6
PGR004G0926 Punica granatum HOM05D003607 ORTHO05D004049 2.0e-26 122.5 97 70.1
arahy.Tifrunner.gnm1.ann1.0UXM82 Arachis hypogaea HOM05D003607 ORTHO05D004049 2.7e-26 122.1 97 70.1
PSO761G0544 Papaver somniferum HOM05D003607 ORTHO05D004049 3.5e-26 121.7 109 61.5
FAN28G1779 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.5e-26 121.3 109 62.4
arahy.Tifrunner.gnm1.ann1.66EI83 Arachis hypogaea HOM05D003607 ORTHO05D004049 5.9e-26 120.9 96 69.8
Cpa.g.sc183.9 Carica papaya HOM05D003607 ORTHO05D004049 5.9e-26 120.9 109 58.7
Oeu036839.1 Olea europaea HOM05D003607 ORTHO05D004049 5.9e-26 120.9 109 62.4
Oeu036840.1 Olea europaea HOM05D003607 ORTHO05D004049 5.9e-26 120.9 109 62.4
PSO384G4166 Papaver somniferum HOM05D003607 ORTHO05D004049 5.9e-26 120.9 107 62.6
CSS0022860 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 7.7e-26 120.6 109 61.5
FAN26G0628 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.0e-25 120.2 109 61.5
Lalb_Chr01g0010411 Lupinus albus HOM05D003607 ORTHO05D004049 1.0e-25 120.2 109 59.6
unitig_748.g8775 Utricularia gibba HOM05D003607 ORTHO05D004049 5.0e-25 117.9 109 60.6
AUR62044160 Chenopodium quinoa HOM05D003607 ORTHO05D004049 8.6e-25 117.1 109 56.9
TWI63G0764 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 1.5e-24 116.3 108 57.4
Eucgr.A01507 Eucalyptus grandis HOM05D003607 ORTHO05D004049 1.9e-24 115.9 93 68.8
Os03g0289200 Oryza sativa ssp. japonica HOM05D003607 ORTHO05D004049 1.9e-24 115.9 110 59.1
Lsat_1_v5_gn_8_23940 Lactuca sativa HOM05D003607 ORTHO05D004049 3.3e-24 115.2 97 62.9
Migut.F01614 Erythranthe guttata HOM05D003607 ORTHO05D004049 4.2e-24 114.8 106 59.4
Psat5g022640 Pisum sativum HOM05D003607 ORTHO05D004049 7.2e-24 114.0 109 58.7
ATR0605G137 Amborella trichopoda HOM05D003607 ORTHO05D004049 1.6e-23 112.8 107 57.9
SEGI_31078 Sequoiadendron giganteum HOM05D003607 ORTHO05D004049 3.6e-23 111.7 109 57.8
Zm00001eb013300 Zea mays HOM05D003607 ORTHO05D004049 6.1e-23 110.9 110 56.4
Zm00001eb397070 Zea mays HOM05D003607 ORTHO05D004049 6.1e-23 110.9 110 57.3
Psat3g033800 Pisum sativum HOM05D003607 ORTHO05D004049 1.0e-22 110.2 95 68.4
Dinv09603 Davidia involucrata HOM05D003607 ORTHO05D004049 1.8e-22 109.4 92 64.1
AUR62002927 Chenopodium quinoa HOM05D003607 ORTHO05D004049 5.2e-22 107.8 99 57.6
AUR62007735 Chenopodium quinoa HOM05D003607 ORTHO05D004049 5.2e-22 107.8 99 57.6
EL10Ac6g14511 Beta vulgaris HOM05D003607 ORTHO05D004049 6.8e-22 107.5 106 54.7
CSS0005550 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 8.9e-22 107.1 96 61.5
CSS0036632 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.2e-21 106.7 96 61.5
Rhsim09G0142700 Rhododendron simsii HOM05D003607 ORTHO05D004049 1.2e-21 106.7 105 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2374 Anthoceros agrestis HOM05D003607 ORTHO05D004049 2.6e-21 105.5 106 56.6
CiPaw.13G038900 Carya illinoinensis HOM05D003607 ORTHO05D004049 1.7e-20 102.8 100 59.0
CBR_g2958 Chara braunii HOM05D003607 ORTHO05D004049 2.2e-20 102.4 108 53.7
Rhsim07G0211000 Rhododendron simsii HOM05D003607 ORTHO05D004049 4.9e-20 101.3 94 59.6
Solyc11g007080.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 6.3e-20 100.9 92 59.8
Peaxi162Scf00173g00511 Petunia axillaris HOM05D003607 ORTHO05D004049 1.1e-19 100.1 92 58.7
Mapoly0150s0018 Marchantia polymorpha HOM05D003607 ORTHO05D004049 1.4e-19 99.8 107 53.3
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 2.4e-19 99.0 92 60.9
FAN04G0747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.1e-19 98.6 92 60.9
Pp3c18_15780 Physcomitrium patens HOM05D003607 ORTHO05D004049 3.5e-18 95.1 107 47.7
Pp3c18_15783 Physcomitrium patens HOM05D003607 ORTHO05D004049 3.5e-18 95.1 107 47.7
Pp3c11_15860 Physcomitrium patens HOM05D003607 ORTHO05D004049 2.5e-16 89.0 107 46.7
Thecc.05G087200 Theobroma cacao HOM05D003607 ORTHO05D004049 4.7e-15 84.7 60 73.3
SMO351G0616 Selaginella moellendorffii HOM05D003607 ORTHO05D004049 6.1e-15 84.3 107 47.7
Sc02g0000900 Simmondsia chinensis HOM05D003607 ORTHO05D004049 5.2e-14 81.3 92 48.9
CBR_g10857 Chara braunii HOM05D003607 ORTHO05D004049 1.7e-12 76.3 108 44.4
Lalb_Chr25g0288381 Lupinus albus HOM05D003607 ORTHO05D004049 6.4e-12 74.3 56 71.4
CDE06G0188 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 1.0e-09 67.0 52 61.5
MCO11G705 Micromonas commoda HOM05D003607 ORTHO05D004049 1.2e-07 60.1 107 35.5


User provided reference genes

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