Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p27690 Brassica napus HOM05D000108 ORTHO05D024582 5.1e-114 414.5 215 100.0
BraA04t18264Z Brassica rapa HOM05D000108 ORTHO05D001149 1.3e-112 409.8 215 99.1
BcaC02g07624 Brassica carinata HOM05D000108 ORTHO05D001149 3.2e-108 395.2 215 95.8
BcaB06g28920 Brassica carinata HOM05D000108 ORTHO05D001149 4.2e-108 394.8 215 94.4
BolC4t28001H Brassica oleracea HOM05D000108 ORTHO05D001149 3.5e-107 391.7 215 95.3
BraA05t19918Z Brassica rapa HOM05D000108 ORTHO05D001149 1.1e-103 380.2 215 92.1
BcaC02g11722 Brassica carinata HOM05D000108 ORTHO05D001149 5.9e-102 374.4 215 90.7
BolC4t22842H Brassica oleracea HOM05D000108 ORTHO05D001149 5.9e-102 374.4 215 90.7
A05p09640 Brassica napus HOM05D000108 ORTHO05D001149 1.0e-101 373.6 215 90.2
Thhalv10016176m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.3e-101 373.2 215 90.2
C04p11980 Brassica napus HOM05D000108 ORTHO05D001149 3.8e-101 371.7 215 90.2
BcaB02g09378 Brassica carinata HOM05D000108 ORTHO05D001149 8.5e-101 370.5 215 89.8
Sp4g18420 Schrenkiella parvula HOM05D000108 ORTHO05D001149 5.5e-100 367.9 215 89.8
AL4G32300 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 2.3e-98 362.5 215 85.6
CARHR130440 Cardamine hirsuta HOM05D000108 ORTHO05D001149 2.0e-97 359.4 215 86.0
AT2G36200 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 4.3e-97 358.2 215 84.7
Carub.0004s1796 Capsella rubella HOM05D000108 ORTHO05D001149 5.3e-95 351.3 214 86.0
Aa31LG5G21320 Aethionema arabicum HOM05D000108 ORTHO05D001149 4.2e-92 341.7 216 80.6
BNapus_Darmor_BZH_scaffold_239p00070 Brassica napus HOM05D000108 ORTHO05D024582 4.4e-81 305.1 158 100.0
THA.LOC104799758 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 9.7e-81 303.9 216 72.7
Aa31LG10G7660 Aethionema arabicum HOM05D000108 ORTHO05D001149 1.0e-77 293.9 214 72.0
THA.LOC104823493 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 6.5e-77 291.2 214 67.8
Cpa.g.sc104.110 Carica papaya HOM05D000108 ORTHO05D001149 4.7e-67 258.5 215 59.5
Atru.chr8.1470 Acer truncatum HOM05D000108 ORTHO05D001149 1.4e-66 256.9 214 60.7
Duzib093G0492 Durio zibethinus HOM05D000108 ORTHO05D001149 1.8e-66 256.5 215 62.3
Duzib106G0700 Durio zibethinus HOM05D000108 ORTHO05D001149 5.2e-66 255.0 215 61.9
COL.COLO4_29695 Corchorus olitorius HOM05D000108 ORTHO05D001149 2.6e-65 252.7 215 61.4
CiPaw.09G016000 Carya illinoinensis HOM05D000108 ORTHO05D001149 4.4e-65 251.9 214 59.8
Cfa016630 Carpinus fangiana HOM05D000108 ORTHO05D001149 5.7e-65 251.5 214 61.2
Haze_19636 Corylus avellana HOM05D000108 ORTHO05D001149 2.8e-64 249.2 214 60.3
Thecc.05G092200 Theobroma cacao HOM05D000108 ORTHO05D001149 4.9e-64 248.4 215 61.4
CiPaw.10G011400 Carya illinoinensis HOM05D000108 ORTHO05D001149 7.0e-63 244.6 213 58.7
Gorai.006G153900 Gossypium raimondii HOM05D000108 ORTHO05D001149 1.6e-62 243.4 215 59.5
Gohir.A09G140300 Gossypium hirsutum HOM05D000108 ORTHO05D001149 2.7e-62 242.7 215 59.1
Prupe.7G103600 Prunus persica HOM05D000108 ORTHO05D001149 2.7e-62 242.7 215 56.7
RcHm_v2.0_Chr3g0474331 Rosa chinensis HOM05D000108 ORTHO05D001149 2.7e-62 242.7 215 57.2
QL07p038527 Quercus lobata HOM05D000108 ORTHO05D001149 4.5e-62 241.9 213 58.2
Gohir.D09G134200 Gossypium hirsutum HOM05D000108 ORTHO05D001149 5.9e-62 241.5 215 59.5
FAN09G2209 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.0e-61 240.7 214 57.5
Lalb_Chr02g0154841 Lupinus albus HOM05D000108 ORTHO05D001149 1.0e-61 240.7 213 60.1
TWI53G1066 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 1.0e-61 240.7 215 60.0
Duzib128G1422 Durio zibethinus HOM05D000108 ORTHO05D001149 1.3e-61 240.4 215 59.1
MD12G1028000 Malus domestica HOM05D000108 ORTHO05D001149 1.3e-61 240.4 215 55.3
FAN05G3241 Fragaria x ananassa HOM05D000108 ORTHO05D001149 2.3e-61 239.6 214 57.5
Lj5g0005745 Lotus japonicus HOM05D000108 ORTHO05D001149 2.9e-61 239.2 214 58.9
Manes.08G027100 Manihot esculenta HOM05D000108 ORTHO05D001149 8.6e-61 237.7 215 59.1
FAN14G5493 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.1e-60 237.3 215 56.3
MD14G1028400 Malus domestica HOM05D000108 ORTHO05D001149 1.1e-60 237.3 215 55.8
Potri.016G077800 Populus trichocarpa HOM05D000108 ORTHO05D001149 2.5e-60 236.1 214 57.9
Gohir.A01G205200 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.3e-60 235.7 216 58.8
Sabra16G0079700 Salix brachista HOM05D000108 ORTHO05D001149 3.3e-60 235.7 214 58.4
CSS0009350 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 5.6e-60 235.0 215 58.1
Lalb_Chr06g0172451 Lupinus albus HOM05D000108 ORTHO05D001149 1.6e-59 233.4 213 58.7
Eucgr.K02024 Eucalyptus grandis HOM05D000108 ORTHO05D001149 2.1e-59 233.0 214 57.5
Gorai.002G238800 Gossypium raimondii HOM05D000108 ORTHO05D001149 3.6e-59 232.3 216 58.3
Manes.09G053600 Manihot esculenta HOM05D000108 ORTHO05D001149 3.6e-59 232.3 215 59.1
Gohir.D01G194700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 6.1e-59 231.5 216 57.4
TAR369G1141 Trochodendron aralioides HOM05D000108 ORTHO05D001149 6.1e-59 231.5 214 57.9
TAR633G1010 Trochodendron aralioides HOM05D000108 ORTHO05D001149 8.0e-59 231.1 214 57.0
FAN02G2608 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.0e-58 230.7 232 53.4
Actinidia31262 Actinidia chinensis HOM05D000108 ORTHO05D001149 1.4e-58 230.3 215 57.7
Sed0016130 Sechium edule HOM05D000108 ORTHO05D001149 1.4e-58 230.3 216 56.5
CSS0030776 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 1.8e-58 229.9 215 57.2
Dinv31703 Davidia involucrata HOM05D000108 ORTHO05D001149 2.3e-58 229.6 214 57.0
CSS0016633 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 4.0e-58 228.8 215 57.2
PGR142G4316 Punica granatum HOM05D000108 ORTHO05D001149 4.0e-58 228.8 215 58.1
Nitab4.5_0001933g0050 Nicotiana tabacum HOM05D000108 ORTHO05D001149 5.2e-58 228.4 214 55.6
Potri.006G210700 Populus trichocarpa HOM05D000108 ORTHO05D001149 6.8e-58 228.0 214 55.6
Sabra16G0082200 Salix brachista HOM05D000001 ORTHO05D001149 6.8e-58 228.0 208 57.7
GSVIVG01033871001 Vitis vinifera HOM05D000108 ORTHO05D001149 6.8e-58 228.0 215 55.3
CANSAT64G2391 Cannabis sativa HOM05D000108 ORTHO05D001149 1.2e-57 227.3 214 54.7
Nn2g14198 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.2e-57 227.3 215 54.0
Sabra16G0082400 Salix brachista HOM05D000001 ORTHO05D001149 1.2e-57 227.3 208 58.2
PGSC0003DMG400008945 Solanum tuberosum HOM05D000108 ORTHO05D001149 1.5e-57 226.9 213 54.5
Cc06_g06060 Coffea canephora HOM05D000108 ORTHO05D001149 2.6e-57 226.1 215 54.4
Phvul.001G191500 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 3.4e-57 225.7 215 55.3
Sopen09g004800 Solanum pennellii HOM05D000108 ORTHO05D001149 3.4e-57 225.7 213 55.4
Solyc09g010060.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 5.7e-57 224.9 213 54.9
TPR.G23361 Trifolium pratense HOM05D000108 ORTHO05D001149 7.5e-57 224.6 216 55.1
Glyma.19G195300 Glycine max HOM05D000108 ORTHO05D001149 1.7e-56 223.4 213 54.5
CAN.G397.76 Capsicum annuum HOM05D000108 ORTHO05D001149 2.2e-56 223.0 213 53.5
PGSC0003DMG400028253 Solanum tuberosum HOM05D000108 ORTHO05D001149 2.9e-56 222.6 213 53.5
CsaV3_3G037420 Cucumis sativus L. HOM05D000108 ORTHO05D001149 1.1e-55 220.7 214 54.2
TAR623G1423 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.4e-55 220.3 215 55.8
arahy.Tifrunner.gnm1.ann1.R3Y850 Arachis hypogaea HOM05D000108 ORTHO05D001149 1.8e-55 219.9 215 54.9
Sed0021651 Sechium edule HOM05D000108 ORTHO05D001149 2.4e-55 219.5 215 54.0
CAN.G1069.12 Capsicum annuum HOM05D000108 ORTHO05D001149 3.2e-55 219.2 213 54.5
arahy.Tifrunner.gnm1.ann1.RA398F Arachis hypogaea HOM05D000108 ORTHO05D001149 7.0e-55 218.0 215 54.4
Lj3C996G12 Lonicera japonica HOM05D000108 ORTHO05D001149 7.0e-55 218.0 215 53.5
MBI17_g29798_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 7.0e-55 218.0 215 55.3
Nn6g34851 Nelumbo nucifera HOM05D000108 ORTHO05D001149 7.0e-55 218.0 215 50.7
Psat3g031920 Pisum sativum HOM05D000108 ORTHO05D001149 7.0e-55 218.0 215 51.6
Medtr7g105030 Medicago truncatula HOM05D000108 ORTHO05D001149 9.2e-55 217.6 216 53.2
Oeu025669.1 Olea europaea HOM05D000108 ORTHO05D001149 9.2e-55 217.6 212 54.2
VMungo1383G2688 Vigna mungo HOM05D000108 ORTHO05D001149 9.2e-55 217.6 215 53.5
Nitab4.5_0003404g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.2e-54 217.2 214 55.6
Ciclev10010974m.g Citrus clementina HOM05D000108 ORTHO05D001149 2.7e-54 216.1 215 55.3
Lj2C140T8 Lonicera japonica HOM05D000108 ORTHO05D001149 2.7e-54 216.1 190 58.9
Solyc10g083310.2 Solanum lycopersicum HOM05D000108 ORTHO05D001149 2.7e-54 216.1 213 53.1
Hma1.2p1_0820F.1_g223950 Hydrangea macrophylla HOM05D000108 ORTHO05D001149 3.5e-54 215.7 201 56.7
Sopen10g032790 Solanum pennellii HOM05D000108 ORTHO05D001149 4.6e-54 215.3 213 53.1
Glyma.03G197300 Glycine max HOM05D000108 ORTHO05D001149 7.8e-54 214.5 215 53.0
Sabra06G0162200 Salix brachista HOM05D000108 ORTHO05D001149 1.3e-53 213.8 229 51.1
Sc20g0006360 Simmondsia chinensis HOM05D000108 ORTHO05D001149 3.0e-53 212.6 214 54.2
TWI74G1552 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 3.0e-53 212.6 195 56.9
vmacro07426 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 5.0e-53 211.8 214 55.6
Actinidia05414 Actinidia chinensis HOM05D000108 ORTHO05D001149 2.5e-52 209.5 214 50.9
Ca_09018_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 2.5e-52 209.5 216 50.9
TPR.G14773 Trifolium pratense HOM05D000108 ORTHO05D001149 2.5e-52 209.5 216 52.3
Medtr1g059730 Medicago truncatula HOM05D000108 ORTHO05D001149 3.3e-52 209.1 213 54.5
Rhsim03G0073800 Rhododendron simsii HOM05D000108 ORTHO05D001149 3.3e-52 209.1 258 48.1
Oeu047851.1 Olea europaea HOM05D000108 ORTHO05D001149 5.6e-52 208.4 215 52.1
HanXRQChr06g0176111 Helianthus annuus HOM05D000108 ORTHO05D001149 1.6e-51 206.8 215 51.6
Oeu047210.1 Olea europaea HOM05D000108 ORTHO05D001149 2.1e-51 206.5 200 53.0
Migut.L01796 Erythranthe guttata HOM05D000108 ORTHO05D001149 2.8e-51 206.1 214 50.0
HanXRQChr05g0133571 Helianthus annuus HOM05D000108 ORTHO05D001149 2.8e-51 206.1 215 53.0
vmacro07421 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 2.8e-51 206.1 209 55.0
Ca_08900_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 3.6e-51 205.7 214 53.3
HanXRQChr08g0229781 Helianthus annuus HOM05D000108 ORTHO05D001149 8.0e-51 204.5 215 50.2
AUR62006204 Chenopodium quinoa HOM05D000108 ORTHO05D001149 1.4e-50 203.8 215 52.1
MSTRG.5859 Avicennia marina HOM05D000108 ORTHO05D001149 1.8e-50 203.4 215 47.9
MELO3C009486.2 Cucumis melo HOM05D000108 ORTHO05D001149 5.2e-50 201.8 215 51.2
Migut.J01016 Erythranthe guttata HOM05D000108 ORTHO05D001149 8.9e-50 201.1 214 50.5
DCAR_013405 Daucus carota HOM05D000108 ORTHO05D001149 1.2e-49 200.7 214 50.5
SGA_v2.0_scaffold184G39977 Striga asiatica HOM05D000108 ORTHO05D001149 1.5e-49 200.3 215 51.2
C04p65220 Brassica napus HOM05D000108 ORTHO05D027658 4.4e-49 198.7 105 99.0
AUR62037015 Chenopodium quinoa HOM05D000108 ORTHO05D001149 4.4e-49 198.7 215 51.6
PSO384G1988 Papaver somniferum HOM05D000108 ORTHO05D001149 4.4e-49 198.7 214 50.0
MSTRG.19272 Avicennia marina HOM05D000108 ORTHO05D001149 4.9e-48 195.3 215 47.4
Lsat_1_v5_gn_9_20980 Lactuca sativa HOM05D000108 ORTHO05D001149 4.9e-48 195.3 216 50.0
Aqoxy2G01094 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 1.1e-47 194.1 213 47.4
Lsat_1_v5_gn_8_78220 Lactuca sativa HOM05D000108 ORTHO05D001149 1.9e-47 193.4 215 50.2
Lalb_Chr01g0018071 Lupinus albus HOM05D000108 ORTHO05D024582 2.4e-47 193.0 195 53.3
Psat6g079880 Pisum sativum HOM05D000108 ORTHO05D001149 2.4e-47 193.0 213 48.4
EL10Ac7g16897 Beta vulgaris HOM05D000108 ORTHO05D001149 3.2e-47 192.6 215 49.3
Hund03938 Selenicereus undatus HOM05D000108 ORTHO05D001149 3.2e-47 192.6 214 48.6
PSO339G0093 Papaver somniferum HOM05D000108 ORTHO05D001149 1.2e-46 190.7 214 48.6
ClCG10G018810 Citrullus lanatus HOM05D000108 ORTHO05D001149 2.0e-46 189.9 190 54.2
PSO339G3190 Papaver somniferum HOM05D000108 ORTHO05D001149 6.6e-45 184.9 221 47.5
SalBow3G3600 Salvia bowleyana HOM05D000108 ORTHO05D001149 1.1e-44 184.1 214 47.2
Zm00001eb039420 Zea mays HOM05D000108 ORTHO05D001149 4.3e-44 182.2 214 46.3
arahy.Tifrunner.gnm1.ann1.KFQ7S3 Arachis hypogaea HOM05D000108 ORTHO05D001149 4.7e-43 178.7 216 48.6
Peaxi162Scf01023g00417 Petunia axillaris HOM05D000108 ORTHO05D001149 8.1e-43 177.9 180 52.8
CDE02G2248 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 1.8e-42 176.8 217 44.2
PSO801G0279 Papaver somniferum HOM05D000108 ORTHO05D001149 2.3e-42 176.4 221 46.6
SHI23862 Sapria himalayana HOM05D000105 ORTHO05D001149 6.8e-42 174.9 201 49.8
HPP92_013814 Vanilla planifolia HOM05D000108 ORTHO05D001149 8.9e-42 174.5 213 43.7
ECA236G2589 Erigeron canadensis HOM05D000108 ORTHO05D001149 1.2e-41 174.1 215 45.6
CDE08G1573 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 1.3e-40 170.6 217 43.3
SGA_v2.0_scaffold35G14046 Striga asiatica HOM05D000108 ORTHO05D001149 2.2e-40 169.9 273 39.9
SalBow5G1070 Salvia bowleyana HOM05D000108 ORTHO05D001149 1.4e-39 167.2 213 44.1
Ah.15g090720 Amaranthus hybridus HOM05D000108 ORTHO05D001149 1.5e-36 157.1 215 43.3
ATR0620G152 Amborella trichopoda HOM05D000108 ORTHO05D001149 8.9e-34 147.9 230 37.4
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 1.4e-23 114.0 124 48.4
Dinv21185 Davidia involucrata HOM05D000108 ORTHO05D001149 1.6e-22 110.5 123 52.0
FvH4_6g19220 Fragaria vesca HOM05D000108 ORTHO05D001149 5.1e-21 105.5 98 52.0
C03p23410 Brassica napus HOM05D000108 ORTHO05D024582 8.1e-19 98.2 59 86.4
Nitab4.5_0001875g0130 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.3e-16 90.9 169 34.9
unitig_8.g4041 Utricularia gibba HOM05D000108 ORTHO05D001149 2.3e-13 80.1 121 38.0
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.2e-08 63.5 73 46.6
Carub.0004s0959 Capsella rubella HOM05D000108 ORTHO05D001149 6.4e-08 62.0 207 24.6
arahy.Tifrunner.gnm1.ann1.LNA654 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.4e-07 60.8 66 47.0
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 2.4e-07 60.1 195 24.6
arahy.Tifrunner.gnm1.ann1.NPS6SW Arachis hypogaea HOM05D000188 ORTHO05D083179 7.1e-07 58.5 70 45.7
BcaB06g28234 Brassica carinata HOM05D000108 ORTHO05D001149 1.6e-06 57.4 199 24.6
Thhalv10016147m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 3.5e-06 56.2 194 24.7
THA.LOC104815761 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 6.0e-06 55.5 209 24.4


User provided reference genes

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