Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p27520 Brassica napus HOM05D002006 ORTHO05D032750 5.9e-52 207.2 103 100.0
BraA04t18248Z Brassica rapa HOM05D002006 ORTHO05D032750 6.6e-43 177.2 96 89.6
BcaC02g07644 Brassica carinata HOM05D002006 ORTHO05D032750 7.8e-28 127.1 101 63.4
Sp4g18220 Schrenkiella parvula HOM05D002006 ORTHO05D002128 1.1e-21 106.7 96 56.2
Thhalv10017613m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 2.8e-17 92.0 81 55.6
Thhalv10017721m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 7.6e-15 84.0 70 61.4
BcaB03g13601 Brassica carinata HOM05D002006 ORTHO05D002128 1.9e-13 79.3 78 47.4
A10p00370 Brassica napus HOM05D002006 ORTHO05D002128 1.9e-13 79.3 79 45.6
BraA10t42316Z Brassica rapa HOM05D002006 ORTHO05D002128 3.2e-13 78.6 78 46.2
BolC5t28830H Brassica oleracea HOM05D002006 ORTHO05D002128 5.4e-13 77.8 79 44.3
Aa31LG1G11000 Aethionema arabicum HOM05D002006 ORTHO05D002128 1.2e-12 76.6 79 45.6
Sp1g00680 Schrenkiella parvula HOM05D002006 ORTHO05D002128 1.6e-12 76.3 73 47.9
CARHR000710 Cardamine hirsuta HOM05D002006 ORTHO05D002128 1.0e-11 73.6 87 41.4
THA.LOC104812138 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.0e-11 73.6 74 45.9
AT1G01640 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 1.3e-11 73.2 73 47.9
THA.LOC104801406 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.7e-11 72.8 73 49.3
Carub.0001s0058 Capsella rubella HOM05D002006 ORTHO05D002128 2.3e-11 72.4 73 46.6
Duzib128G1589 Durio zibethinus HOM05D002006 ORTHO05D002128 6.6e-11 70.9 73 45.2
Gohir.D04G013900 Gossypium hirsutum HOM05D002006 ORTHO05D002128 6.6e-11 70.9 73 46.6
AL1G10740 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 8.7e-11 70.5 73 46.6
Thecc.10G172500 Theobroma cacao HOM05D002006 ORTHO05D002128 1.1e-10 70.1 73 46.6
Gohir.A05G401700 Gossypium hirsutum HOM05D002006 ORTHO05D002128 1.9e-10 69.3 73 46.6
Gorai.012G016300 Gossypium raimondii HOM05D002006 ORTHO05D002128 1.9e-10 69.3 73 45.2
AL6G53030 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 7.3e-10 67.4 90 37.8
Duzib106G1806 Durio zibethinus HOM05D002006 ORTHO05D002128 4.8e-09 64.7 73 42.5
Thecc.10G172400 Theobroma cacao HOM05D002006 ORTHO05D002128 4.8e-09 64.7 75 41.3
Cpa.g.sc19.97 Carica papaya HOM05D002006 ORTHO05D002128 6.2e-09 64.3 73 41.1
C04p01960 Brassica napus HOM05D002006 ORTHO05D002128 1.1e-08 63.5 69 46.4
BolC4t21846H Brassica oleracea HOM05D002006 ORTHO05D002128 1.1e-08 63.5 69 46.4
THA.LOC104824350 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.1e-08 63.5 73 39.7
Sabra13G0079300 Salix brachista HOM05D002006 ORTHO05D002128 1.8e-08 62.8 76 42.1
Sc11g0005660 Simmondsia chinensis HOM05D002006 ORTHO05D002128 1.8e-08 62.8 70 44.3
BcaB01g00012 Brassica carinata HOM05D002006 ORTHO05D002128 2.4e-08 62.4 79 38.0
Carub.0005s2301 Capsella rubella HOM05D002006 ORTHO05D002128 2.4e-08 62.4 79 35.4
THA.LOC104824593 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 2.4e-08 62.4 70 42.9
AL5G37550 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 3.1e-08 62.0 79 35.4
CARHR166390 Cardamine hirsuta HOM05D002006 ORTHO05D002128 3.1e-08 62.0 79 35.4
Manes.10G006400 Manihot esculenta HOM05D002006 ORTHO05D002128 3.1e-08 62.0 73 39.7
TWI53G1315 Tripterygium wilfordii HOM05D002006 ORTHO05D002128 3.1e-08 62.0 76 40.8
BcaC07g39939 Brassica carinata HOM05D002006 ORTHO05D002128 4.0e-08 61.6 79 36.7
A05p01700 Brassica napus HOM05D002006 ORTHO05D002128 4.0e-08 61.6 69 46.4
A09p49210 Brassica napus HOM05D002006 ORTHO05D002128 4.0e-08 61.6 79 36.7
C08p31550 Brassica napus HOM05D002006 ORTHO05D002128 4.0e-08 61.6 79 36.7
BolC8t50777H Brassica oleracea HOM05D002006 ORTHO05D002128 4.0e-08 61.6 79 36.7
BraA05t19167Z Brassica rapa HOM05D002006 ORTHO05D002128 4.0e-08 61.6 69 46.4
BraA09t40374Z Brassica rapa HOM05D002006 ORTHO05D002128 4.0e-08 61.6 79 36.7
Ciclev10032355m.g Citrus clementina HOM05D002006 ORTHO05D002128 4.0e-08 61.6 79 39.2
COL.COLO4_28699 Corchorus olitorius HOM05D002006 ORTHO05D002128 4.0e-08 61.6 75 40.0
Thhalv10029325m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 4.0e-08 61.6 69 46.4
Potri.013G083800 Populus trichocarpa HOM05D002006 ORTHO05D002128 4.0e-08 61.6 70 41.4
Gohir.A05G401600 Gossypium hirsutum HOM05D002006 ORTHO05D002128 5.3e-08 61.2 75 38.7
AL8G20260 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 6.9e-08 60.8 93 32.3
BcaC02g12714 Brassica carinata HOM05D002006 ORTHO05D002128 6.9e-08 60.8 69 43.5
Sp5g06270 Schrenkiella parvula HOM05D002006 ORTHO05D002128 6.9e-08 60.8 79 38.0
AT3G56230 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 1.2e-07 60.1 79 35.4
BcaB06g28480 Brassica carinata HOM05D002006 ORTHO05D021918 1.2e-07 60.1 74 37.8
Carub.0004s0484 Capsella rubella HOM05D002006 ORTHO05D002128 1.2e-07 60.1 69 40.6
Thhalv10017762m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.2e-07 60.1 79 38.0
Nn2g11079 Nelumbo nucifera HOM05D002006 ORTHO05D002128 1.2e-07 60.1 78 33.3
COL.COLO4_38203 Corchorus olitorius HOM05D002006 ORTHO05D002128 1.5e-07 59.7 75 38.7
Gohir.D04G014150 Gossypium hirsutum HOM05D002006 ORTHO05D002128 1.5e-07 59.7 75 38.7
Gorai.012G016700 Gossypium raimondii HOM05D002006 ORTHO05D002128 1.5e-07 59.7 75 38.7
Gohir.D04G014100 Gossypium hirsutum HOM05D002006 ORTHO05D002128 2.0e-07 59.3 75 37.3
Gorai.012G016600 Gossypium raimondii HOM05D002006 ORTHO05D002128 2.0e-07 59.3 75 37.3
AUR62012337 Chenopodium quinoa HOM05D002006 ORTHO05D002128 2.6e-07 58.9 70 42.9
AUR62022981 Chenopodium quinoa HOM05D002006 ORTHO05D002128 2.6e-07 58.9 70 42.9
Sp4g22790 Schrenkiella parvula HOM05D002006 ORTHO05D002128 2.6e-07 58.9 69 40.6
BraA04t17903Z Brassica rapa HOM05D002006 ORTHO05D002128 3.4e-07 58.5 74 36.5
Gorai.012G016500 Gossypium raimondii HOM05D002006 ORTHO05D002128 3.4e-07 58.5 75 37.3
PSO384G3750 Papaver somniferum HOM05D002006 ORTHO05D002128 3.4e-07 58.5 75 40.0
EL10Ac2g04288 Beta vulgaris HOM05D002006 ORTHO05D002128 4.5e-07 58.2 70 41.4
BcaB02g07843 Brassica carinata HOM05D002006 ORTHO05D002128 4.5e-07 58.2 82 37.8
C04p01980 Brassica napus HOM05D002006 ORTHO05D002128 4.5e-07 58.2 75 36.0
BolC4t21848H Brassica oleracea HOM05D002006 ORTHO05D002128 4.5e-07 58.2 75 36.0
PSO339G2463 Papaver somniferum HOM05D002006 ORTHO05D002128 4.5e-07 58.2 75 40.0
Peaxi162Scf00284g00021 Petunia axillaris HOM05D002006 ORTHO05D002128 4.5e-07 58.2 82 37.8
RcHm_v2.0_Chr1g0371521 Rosa chinensis HOM05D002006 ORTHO05D002128 4.5e-07 58.2 82 40.2
TAR633G1468 Trochodendron aralioides HOM05D002006 ORTHO05D002128 4.5e-07 58.2 70 42.9
Cc02_g05690 Coffea canephora HOM05D002006 ORTHO05D002128 5.8e-07 57.8 70 41.4
HanXRQChr14g0460311 Helianthus annuus HOM05D002006 ORTHO05D002128 5.8e-07 57.8 70 40.0
Nitab4.5_0000263g0130 Nicotiana tabacum HOM05D002006 ORTHO05D002128 5.8e-07 57.8 82 37.8
Aa31LG10G11140 Aethionema arabicum HOM05D002006 ORTHO05D002128 7.6e-07 57.4 78 35.9
BraA04t18542Z Brassica rapa HOM05D002006 ORTHO05D042573 7.6e-07 57.4 65 43.1
Duzib114G0585 Durio zibethinus HOM05D002006 ORTHO05D002128 7.6e-07 57.4 75 38.7
AL4G16550 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 9.9e-07 57.0 69 37.7
AL8G21380 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 9.9e-07 57.0 71 40.8
Migut.F00581 Erythranthe guttata HOM05D002006 ORTHO05D002128 9.9e-07 57.0 70 38.6
Solyc06g050860.3 Solanum lycopersicum HOM05D002006 ORTHO05D002128 9.9e-07 57.0 75 40.0
Sopen06g016540 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-07 57.0 75 40.0
SGA_v2.0_scaffold60G20931 Striga asiatica HOM05D002006 ORTHO05D002128 9.9e-07 57.0 79 32.9
AL4G16510 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 1.3e-06 56.6 73 38.4
A04p23790 Brassica napus HOM05D002006 ORTHO05D021918 1.3e-06 56.6 74 35.1
ECA238G3018 Erigeron canadensis HOM05D002006 ORTHO05D002128 1.3e-06 56.6 70 38.6
Gohir.D04G014000 Gossypium hirsutum HOM05D002006 ORTHO05D002128 1.3e-06 56.6 75 36.0
Oeu024604.1 Olea europaea HOM05D002006 ORTHO05D002128 1.3e-06 56.6 70 42.9
Actinidia33886 Actinidia chinensis HOM05D002006 ORTHO05D002128 1.7e-06 56.2 83 34.9
Thhalv10011973m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.7e-06 56.2 71 38.0
Actinidia29742 Actinidia chinensis HOM05D002006 ORTHO05D002128 2.2e-06 55.8 70 37.1
Aa31sc236G40 Aethionema arabicum HOM05D002006 ORTHO05D002128 2.2e-06 55.8 71 38.0
FAN06G2847 Fragaria x ananassa HOM05D002006 ORTHO05D002128 2.2e-06 55.8 82 37.8
Lj6g0006353 Lotus japonicus HOM05D002006 ORTHO05D002128 2.2e-06 55.8 80 33.8
MD01G1161900 Malus domestica HOM05D002006 ORTHO05D002128 2.2e-06 55.8 78 37.2
Prupe.2G260000 Prunus persica HOM05D002006 ORTHO05D002128 2.2e-06 55.8 79 38.0
Sp7g13200 Schrenkiella parvula HOM05D002006 ORTHO05D002128 2.2e-06 55.8 74 37.8
Aqoxy4G02151 Aquilegia oxysepala HOM05D002006 ORTHO05D002128 2.9e-06 55.5 70 40.0
MSTRG.8906 Avicennia marina HOM05D002006 ORTHO05D002128 2.9e-06 55.5 78 37.2
CSS0007075 Camellia sinensis var. sinensis HOM05D002006 ORTHO05D002128 2.9e-06 55.5 70 38.6
Carub.0004s0485 Capsella rubella HOM05D002006 ORTHO05D002128 2.9e-06 55.5 68 39.7
Haze_17305 Corylus avellana HOM05D002006 ORTHO05D002128 2.9e-06 55.5 78 37.2
PGR044G0271 Punica granatum HOM05D002006 ORTHO05D002128 2.9e-06 55.5 78 32.1
A03p22740 Brassica napus HOM05D002006 ORTHO05D002128 3.8e-06 55.1 69 40.6
A09p00490 Brassica napus HOM05D002006 ORTHO05D002128 3.8e-06 55.1 78 37.2
C03p26980 Brassica napus HOM05D002006 ORTHO05D002128 3.8e-06 55.1 69 40.6
BolC3t15080H Brassica oleracea HOM05D002006 ORTHO05D002128 3.8e-06 55.1 69 40.6
BraA03t11498Z Brassica rapa HOM05D002006 ORTHO05D002128 3.8e-06 55.1 69 40.6
BraA09t35711Z Brassica rapa HOM05D002006 ORTHO05D002128 3.8e-06 55.1 78 37.2
Duzib128G0784 Durio zibethinus HOM05D002006 ORTHO05D002128 3.8e-06 55.1 75 38.7
Eucgr.J00138 Eucalyptus grandis HOM05D002006 ORTHO05D002128 3.8e-06 55.1 70 35.7
FvH4_7g25521 Fragaria vesca HOM05D002006 ORTHO05D002128 3.8e-06 55.1 82 39.0
FAN01G3176 Fragaria x ananassa HOM05D002006 ORTHO05D002128 3.8e-06 55.1 82 39.0
FAN10G0941 Fragaria x ananassa HOM05D002006 ORTHO05D002128 3.8e-06 55.1 82 39.0
SGA_v2.0_scaffold60G20933 Striga asiatica HOM05D002006 ORTHO05D002128 3.8e-06 55.1 95 32.6
C04p60210 Brassica napus HOM05D002006 ORTHO05D002128 4.9e-06 54.7 79 36.7
BolC9t52972H Brassica oleracea HOM05D002006 ORTHO05D002128 4.9e-06 54.7 78 35.9
Carub.0004s0486 Capsella rubella HOM05D002006 ORTHO05D002128 4.9e-06 54.7 69 43.5
Sp6g04680 Schrenkiella parvula HOM05D002006 ORTHO05D002128 4.9e-06 54.7 82 36.6
GSVIVG01032719001 Vitis vinifera HOM05D002006 ORTHO05D002128 4.9e-06 54.7 82 35.4
Aa31sc126G20 Aethionema arabicum HOM05D002006 ORTHO05D002128 6.4e-06 54.3 68 41.2
AL4G38290 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 6.4e-06 54.3 73 39.7
BcaB01g02249 Brassica carinata HOM05D002006 ORTHO05D002128 6.4e-06 54.3 88 33.0
BraA05t20596Z Brassica rapa HOM05D002006 ORTHO05D002128 6.4e-06 54.3 74 36.5
Thhalv10017581m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 6.4e-06 54.3 69 40.6
AL8G21400 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 8.4e-06 53.9 69 40.6
Cc02_g05680 Coffea canephora HOM05D002006 ORTHO05D002128 8.4e-06 53.9 70 37.1
Haze_17325 Corylus avellana HOM05D002006 ORTHO05D002128 8.4e-06 53.9 70 40.0
Dinv10556 Davidia involucrata HOM05D002006 ORTHO05D002128 8.4e-06 53.9 70 37.1
Thhalv10017692m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 8.4e-06 53.9 83 37.3
THA.LOC104824594 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 8.4e-06 53.9 70 38.6


User provided reference genes

Program Settings