Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 3.9e-145 518.1 258 100.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 3.3e-144 515.0 258 99.6
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.3e-124 449.9 253 89.3
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.3e-124 449.9 253 89.3
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.7e-116 422.9 222 93.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-100 369.4 213 87.8
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.6e-88 329.3 192 84.4
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 3.7e-87 325.5 192 83.3
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 6.8e-81 304.7 186 81.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 9.3e-78 294.3 187 75.9
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.0e-76 290.8 184 77.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 2.8e-74 282.7 164 82.3
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 8.1e-74 281.2 188 73.4
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.4e-73 280.4 184 73.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.9e-73 278.1 190 74.2
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.0e-72 276.6 201 68.2
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 5.8e-72 275.0 187 69.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.6e-69 266.9 184 68.5
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.0e-69 265.0 180 70.6
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 3.0e-68 262.7 188 67.6
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.0e-68 262.7 182 67.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 3.9e-68 262.3 190 66.3
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.9e-68 262.3 203 63.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 5.1e-68 261.9 182 67.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.7e-68 261.2 185 67.0
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.5e-67 260.4 195 63.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.5e-67 260.4 182 68.1
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.9e-67 260.0 180 68.9
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.5e-67 259.6 191 65.4
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.3e-67 259.2 180 68.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 4.3e-67 258.8 179 65.4
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.3e-67 258.8 180 69.4
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 7.3e-67 258.1 179 67.6
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 9.6e-67 257.7 191 64.4
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-66 257.3 186 64.0
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.3e-66 257.3 180 67.2
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.6e-66 255.8 185 67.0
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.8e-66 255.4 188 63.3
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.8e-66 255.4 184 63.6
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 4.8e-66 255.4 180 67.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 6.2e-66 255.0 182 67.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 8.1e-66 254.6 175 69.7
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.1e-65 254.2 181 64.1
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.4e-65 253.1 184 63.6
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.3e-65 251.9 173 66.5
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 6.9e-65 251.5 182 64.8
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 1.5e-64 250.4 194 63.9
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.5e-64 250.4 182 67.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.5e-64 250.4 182 65.4
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.4e-64 249.2 174 67.8
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.5e-64 248.8 184 62.0
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 7.6e-64 248.1 185 64.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 7.6e-64 248.1 179 65.9
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.3e-63 247.3 191 62.3
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.3e-63 247.3 182 63.7
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.7e-63 246.9 188 64.9
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.9e-63 245.4 174 67.8
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 6.4e-63 245.0 183 63.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 8.4e-63 244.6 180 65.0
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 8.4e-63 244.6 180 65.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.1e-62 244.2 179 64.8
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.1e-62 244.2 183 62.8
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.1e-62 244.2 182 64.3
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.4e-62 243.8 180 65.0
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 2.4e-62 243.0 190 61.6
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.4e-62 243.0 182 63.7
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.2e-62 242.7 180 63.9
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 3.2e-62 242.7 179 63.1
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.2e-62 242.3 180 65.0
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 5.5e-62 241.9 178 64.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 7.1e-62 241.5 174 66.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 7.1e-62 241.5 180 65.0
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.7e-61 239.6 165 68.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.7e-61 239.6 179 60.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.5e-61 239.2 176 63.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 3.5e-61 239.2 184 62.5
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 4.6e-61 238.8 172 68.6
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 7.9e-61 238.0 184 60.3
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.0e-60 237.7 173 62.4
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.3e-60 237.3 165 69.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.3e-60 237.3 182 61.0
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 3.9e-60 235.7 184 62.5
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.9e-59 233.4 191 57.6
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.3e-59 232.6 165 67.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 5.6e-59 231.9 184 61.4
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 7.4e-59 231.5 186 60.2
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.6e-58 230.3 195 61.0
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.1e-58 229.9 183 62.3
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.8e-58 229.6 181 65.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 6.2e-58 228.4 177 65.0
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.4e-57 227.3 177 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.8e-57 226.9 178 58.4
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 5.3e-57 225.3 191 58.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 9.0e-57 224.6 158 67.7
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.4e-56 222.6 195 56.9
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.8e-56 221.9 166 67.5
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 5.8e-56 221.9 188 56.4
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 7.6e-56 221.5 167 67.1
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 7.6e-56 221.5 187 57.2
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.3e-55 220.7 182 59.3
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 3.8e-55 219.2 201 56.7
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 8.4e-55 218.0 182 57.7
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.1e-54 217.6 182 61.0
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 4.2e-54 215.7 178 60.1
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 4.2e-54 215.7 182 57.7
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.2e-53 214.2 185 56.8
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.3e-51 205.7 148 66.2
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 1.3e-47 194.1 132 68.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.2e-47 193.4 200 49.0
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 5.0e-47 192.2 170 57.1
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 6.5e-47 191.8 135 65.2
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.1e-45 186.8 132 65.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 6.7e-44 181.8 184 47.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.7e-44 181.8 168 52.4
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.9e-43 180.3 115 77.4
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 4.3e-43 179.1 165 55.8
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.4e-43 178.3 168 50.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.6e-42 177.2 160 51.9
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.6e-42 177.2 132 58.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.3e-42 175.3 152 53.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.0e-39 167.9 154 50.6
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 2.5e-38 163.3 111 65.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.1e-37 160.2 136 53.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 7.9e-37 158.3 190 44.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.0e-35 153.7 180 47.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-35 152.5 125 56.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.2e-34 150.2 177 45.2
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.0e-31 141.4 102 64.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-31 140.6 160 45.6
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.5e-31 138.3 125 54.4
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.1e-29 133.7 184 41.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.1e-29 133.7 188 41.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.3e-26 122.1 100 59.0
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-17 94.4 89 47.2
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.5e-16 89.4 117 41.9
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.2e-11 74.7 110 40.0
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 2.4e-09 67.0 49 67.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 9.1e-09 65.1 50 64.0
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-07 60.8 53 52.8
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.5e-07 58.5 58 55.2
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 9.4e-06 55.1 48 58.3


User provided reference genes

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