Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 3.2e-136 488.4 248 100.0
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.5e-130 469.5 250 97.6
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.1e-120 436.8 251 92.8
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 7.2e-120 434.1 250 92.4
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-112 409.5 254 86.6
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.8e-110 402.9 223 94.2
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 6.7e-110 401.0 250 85.6
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.5e-109 399.8 249 84.7
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.5e-109 399.8 249 84.7
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 4.4e-109 398.3 249 85.1
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 2.2e-108 396.0 249 84.3
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 3.7e-108 395.2 249 85.1
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 4.1e-107 391.7 249 83.1
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 2.7e-106 389.0 249 83.1
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.9e-104 382.9 249 81.9
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 2.2e-100 369.4 252 81.0
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 1.4e-99 366.7 253 79.4
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.3e-84 317.0 254 67.3
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.3e-84 317.0 251 66.9
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 7.8e-82 307.8 251 66.1
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 5.6e-80 301.6 253 64.0
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.1e-79 299.7 251 64.9
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.8e-79 299.3 251 63.3
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 4.0e-78 295.4 250 64.4
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.0e-78 295.4 252 63.9
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 8.9e-78 294.3 253 65.2
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 1.2e-77 293.9 251 62.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.0e-77 293.1 251 62.5
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.0e-77 293.1 251 63.3
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.0e-77 293.1 251 62.5
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 3.4e-77 292.4 253 61.7
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.4e-77 292.4 253 61.7
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.4e-77 292.4 253 61.7
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.4e-77 292.4 254 61.8
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-77 292.0 253 61.7
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.4e-77 292.0 254 61.8
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.4e-77 292.0 251 63.3
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 5.8e-77 291.6 254 62.2
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.8e-77 291.6 255 62.7
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 5.8e-77 291.6 251 64.1
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 5.8e-77 291.6 253 61.3
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.8e-77 291.6 250 63.2
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 5.8e-77 291.6 257 62.3
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 7.5e-77 291.2 251 64.1
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 7.5e-77 291.2 253 62.1
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.5e-77 291.2 251 62.2
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.3e-76 290.4 254 61.4
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.3e-76 290.4 249 63.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.3e-76 290.4 255 60.4
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.7e-76 290.0 254 61.0
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.9e-76 289.3 252 63.9
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 2.9e-76 289.3 259 62.5
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 4.9e-76 288.5 250 62.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.3e-76 287.7 251 63.7
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.4e-75 287.0 251 61.4
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.9e-75 286.6 255 62.4
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 2.4e-75 286.2 253 64.4
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.4e-75 286.2 251 61.8
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 5.4e-75 285.0 252 62.3
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 7.0e-75 284.6 255 62.4
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 7.0e-75 284.6 258 62.0
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-74 283.9 259 60.6
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.6e-74 283.5 253 60.9
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.5e-74 282.3 257 63.4
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 4.6e-74 282.0 251 62.2
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 6.0e-74 281.6 263 59.7
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 6.0e-74 281.6 255 62.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.0e-73 280.8 256 62.5
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.3e-73 280.4 249 61.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 3.0e-73 279.3 193 72.5
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 3.0e-73 279.3 219 66.2
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.9e-73 278.9 229 65.5
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 6.6e-73 278.1 253 61.7
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 8.6e-73 277.7 253 63.6
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 8.6e-73 277.7 248 58.9
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 8.6e-73 277.7 255 61.2
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.1e-72 277.3 195 73.8
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.5e-72 276.9 251 59.0
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.9e-72 276.6 193 73.6
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.5e-72 276.2 251 62.2
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 3.3e-72 275.8 192 72.9
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 7.3e-72 274.6 256 60.9
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 7.3e-72 274.6 193 70.5
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 9.5e-72 274.2 255 60.8
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 9.5e-72 274.2 251 61.4
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.2e-71 273.9 255 60.4
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.6e-71 273.5 255 60.4
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-71 273.5 220 63.6
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.8e-71 272.7 244 62.3
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.8e-71 272.7 252 60.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 3.6e-71 272.3 254 60.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.1e-70 270.8 224 63.4
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.4e-70 270.4 226 63.7
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.8e-70 270.0 253 61.7
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.8e-70 270.0 239 59.0
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 4.0e-70 268.9 177 75.7
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 5.2e-70 268.5 191 71.2
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.2e-69 267.3 190 70.5
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.5e-69 266.9 245 60.4
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.4e-69 265.4 187 71.1
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 5.8e-69 265.0 254 59.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.8e-69 265.0 243 61.7
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 6.4e-68 261.5 191 66.5
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.1e-67 260.8 252 58.3
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.1e-67 258.8 251 57.8
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 9.2e-67 257.7 192 68.2
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.1e-66 256.5 192 68.8
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.0e-65 254.2 228 61.0
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 6.6e-65 251.5 238 60.5
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 3.3e-64 249.2 162 75.9
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.6e-63 246.9 254 53.5
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 3.6e-63 245.7 225 59.1
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.8e-60 235.7 160 71.2
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.9e-59 233.4 245 55.1
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.7e-57 226.9 211 60.2
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.9e-57 225.7 111 97.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.5e-48 196.4 120 75.8
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 4.3e-48 195.7 121 74.4
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 5.6e-48 195.3 121 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 7.1e-43 178.3 170 52.4
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.0e-41 172.9 182 47.8
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.9e-40 170.2 163 55.8
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 7.4e-40 168.3 189 51.3
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 4.5e-37 159.1 194 44.8
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.9e-36 155.6 203 43.8
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.9e-36 155.6 183 47.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-29 134.4 191 41.4
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.3e-25 120.2 173 36.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.1e-22 109.8 68 73.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 9.7e-16 88.2 152 30.3
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 3.8e-12 76.3 127 44.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.3e-09 67.0 115 40.9
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 3.0e-09 66.6 110 40.9
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 5.1e-09 65.9 209 30.1


User provided reference genes

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