Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p26430 Brassica napus HOM05D004559 ORTHO05D005283 1.1e-74 283.1 135 100.0
C04p63840 Brassica napus HOM05D004559 ORTHO05D005283 1.1e-74 283.1 135 100.0
BraA04t18147Z Brassica rapa HOM05D004559 ORTHO05D005283 1.1e-74 283.1 135 100.0
BcaB06g28777 Brassica carinata HOM05D004559 ORTHO05D005283 3.6e-65 251.5 123 93.5
BolC4t27851H Brassica oleracea HOM05D004559 ORTHO05D005283 1.8e-64 249.2 124 93.5
BcaC02g11512 Brassica carinata HOM05D004559 ORTHO05D005283 5.2e-64 247.7 130 87.7
C04p14530 Brassica napus HOM05D004559 ORTHO05D005283 5.2e-64 247.7 130 87.7
BcaB06g28776 Brassica carinata HOM05D004559 ORTHO05D005283 1.5e-63 246.1 124 91.9
A05p11180 Brassica napus HOM05D004559 ORTHO05D005283 2.6e-63 245.4 130 86.2
BraA04t18146Z Brassica rapa HOM05D004559 ORTHO05D005283 2.6e-63 245.4 124 91.1
BraA05t20064Z Brassica rapa HOM05D004559 ORTHO05D005283 2.6e-63 245.4 130 86.2
Sp4g16760 Schrenkiella parvula HOM05D004559 ORTHO05D005283 2.6e-63 245.4 124 91.1
BolC4t23036H Brassica oleracea HOM05D004559 ORTHO05D005283 5.7e-63 244.2 130 87.7
BcaB02g09537 Brassica carinata HOM05D004559 ORTHO05D005283 2.2e-62 242.3 130 85.4
AL4G30470 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 3.7e-62 241.5 124 89.5
A04p26420 Brassica napus HOM05D004559 ORTHO05D005283 4.9e-62 241.1 124 89.5
C04p63830 Brassica napus HOM05D004559 ORTHO05D005283 4.9e-62 241.1 124 89.5
Thhalv10016547m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 6.4e-62 240.7 124 89.5
Thhalv10016552m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 1.4e-61 239.6 122 89.3
Aa31LG10G6900 Aethionema arabicum HOM05D004559 ORTHO05D005283 2.4e-61 238.8 128 84.4
CARHR128580 Cardamine hirsuta HOM05D004559 ORTHO05D005283 3.2e-61 238.4 124 87.9
AT2G34500 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 9.2e-61 236.9 119 89.9
CARHR128590 Cardamine hirsuta HOM05D004559 ORTHO05D005283 2.0e-60 235.7 124 87.1
Carub.0004s1617 Capsella rubella HOM05D004559 ORTHO05D005283 7.8e-60 233.8 123 85.4
THA.LOC104814293 Tarenaya hassleriana HOM05D004559 ORTHO05D005283 7.8e-60 233.8 126 84.1
CARHR122010 Cardamine hirsuta HOM05D004559 ORTHO05D005283 7.3e-58 227.3 130 82.3
AL4G30460 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 2.8e-57 225.3 120 82.5
AT2G34490 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 3.6e-57 224.9 120 81.7
Carub.0004s1616 Capsella rubella HOM05D004559 ORTHO05D005283 4.4e-55 218.0 118 82.2
AL4G23390 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 2.9e-54 215.3 118 83.1
Thecc.06G152000 Theobroma cacao HOM05D004559 ORTHO05D005283 1.1e-53 213.4 124 78.2
AT2G28850 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.2e-52 209.9 118 81.4
Manes.01G172800 Manihot esculenta HOM05D004559 ORTHO05D005283 1.2e-52 209.9 124 79.0
Medtr2g019640 Medicago truncatula HOM05D004559 ORTHO05D005283 2.7e-52 208.8 121 78.5
Gorai.009G155800 Gossypium raimondii HOM05D004559 ORTHO05D005283 3.5e-52 208.4 130 73.8
AT2G28860 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 6.0e-52 207.6 118 79.7
Gohir.A05G149200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 6.0e-52 207.6 130 73.8
Gohir.A05G149100 Gossypium hirsutum HOM05D004559 ORTHO05D005283 7.8e-52 207.2 130 73.1
Ca_00552_v3 Cicer arietinum L. HOM05D004559 ORTHO05D005283 1.3e-51 206.5 127 74.8
Glyma.15G095000 Glycine max HOM05D004559 ORTHO05D005283 1.3e-51 206.5 127 74.8
TPR.G35511 Trifolium pratense HOM05D004559 ORTHO05D005283 1.3e-51 206.5 127 74.0
Glyma.13G217400 Glycine max HOM05D004559 ORTHO05D005283 2.3e-51 205.7 127 73.2
Duzib235G0428 Durio zibethinus HOM05D004559 ORTHO05D005283 3.9e-51 204.9 124 75.0
Gohir.D05G151700 Gossypium hirsutum HOM05D004559 ORTHO05D005283 3.9e-51 204.9 130 72.3
Potri.004G131700 Populus trichocarpa HOM05D004559 ORTHO05D005283 5.0e-51 204.5 130 73.8
PSO407G0284 Papaver somniferum HOM05D004559 ORTHO05D005283 1.9e-50 202.6 118 76.3
Ciclev10014973m.g Citrus clementina HOM05D004559 ORTHO05D005283 3.3e-50 201.8 124 73.4
Cfa000955 Carpinus fangiana HOM05D004559 ORTHO05D005283 4.3e-50 201.4 124 75.0
Gohir.D05G151600 Gossypium hirsutum HOM05D004559 ORTHO05D005283 4.3e-50 201.4 130 70.8
PSO170G5325 Papaver somniferum HOM05D004559 ORTHO05D005283 4.3e-50 201.4 124 72.6
Phvul.006G163800 Phaseolus vulgaris HOM05D004559 ORTHO05D005283 4.3e-50 201.4 127 71.7
Carub.0004s0985 Capsella rubella HOM05D004559 ORTHO05D005283 5.6e-50 201.1 116 80.2
Cpa.g.sc166.19 Carica papaya HOM05D004559 ORTHO05D005283 5.6e-50 201.1 120 74.2
Gohir.D06G142200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 5.6e-50 201.1 124 74.2
Eucgr.D00302 Eucalyptus grandis HOM05D004559 ORTHO05D005283 7.3e-50 200.7 130 70.8
COL.COLO4_31091 Corchorus olitorius HOM05D004559 ORTHO05D005283 1.6e-49 199.5 124 74.2
VMungo0540G1851 Vigna mungo HOM05D004559 ORTHO05D005283 1.6e-49 199.5 127 71.7
Atru.chr10.1255 Acer truncatum HOM05D004559 ORTHO05D005283 2.1e-49 199.1 119 76.5
Lalb_Chr18g0055551 Lupinus albus HOM05D004559 ORTHO05D005283 2.1e-49 199.1 127 71.7
Duzib192G1007 Durio zibethinus HOM05D004559 ORTHO05D005283 2.8e-49 198.7 124 72.6
Lj6g0026599 Lotus japonicus HOM05D004559 ORTHO05D005283 2.8e-49 198.7 127 70.9
Manes.02G132100 Manihot esculenta HOM05D004559 ORTHO05D005283 3.6e-49 198.4 124 75.8
Gohir.A06G137102 Gossypium hirsutum HOM05D004559 ORTHO05D005283 4.7e-49 198.0 125 72.0
Lj6g0003176 Lotus japonicus HOM05D004559 ORTHO05D005283 6.2e-49 197.6 121 73.6
PGR083G1233 Punica granatum HOM05D004559 ORTHO05D005283 6.2e-49 197.6 123 72.4
Migut.H01366 Erythranthe guttata HOM05D004559 ORTHO05D005283 8.1e-49 197.2 120 74.2
TAR626G0687 Trochodendron aralioides HOM05D004559 ORTHO05D005283 1.4e-48 196.4 118 76.3
arahy.Tifrunner.gnm1.ann1.5ZLV04 Arachis hypogaea HOM05D004559 ORTHO05D005283 1.8e-48 196.1 121 71.1
arahy.Tifrunner.gnm1.ann1.64U7NV Arachis hypogaea HOM05D004559 ORTHO05D005283 1.8e-48 196.1 121 71.1
QL05p058743 Quercus lobata HOM05D004559 ORTHO05D005283 1.8e-48 196.1 129 71.3
Haze_05570 Corylus avellana HOM05D004559 ORTHO05D005283 3.1e-48 195.3 124 73.4
TWI73G0246 Tripterygium wilfordii HOM05D004559 ORTHO05D005283 5.2e-48 194.5 123 75.6
FAN21G2502 Fragaria x ananassa HOM05D004559 ORTHO05D005283 6.8e-48 194.1 124 71.8
SalBow7G0183 Salvia bowleyana HOM05D004559 ORTHO05D005283 6.8e-48 194.1 120 72.5
Aqoxy4G00090 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 1.2e-47 193.4 118 72.0
ClCG01G024550 Citrullus lanatus HOM05D004559 ORTHO05D005283 1.2e-47 193.4 130 70.0
Gorai.010G166100 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.2e-47 193.4 124 71.8
FAN25G1224 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.5e-47 193.0 124 71.0
Oeu034159.1 Olea europaea HOM05D004559 ORTHO05D005283 1.5e-47 193.0 118 72.0
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 2.6e-47 192.2 117 75.2
CSS0018950 Camellia sinensis var. sinensis HOM05D004559 ORTHO05D005283 3.4e-47 191.8 126 66.7
PSO675G8299 Papaver somniferum HOM05D004559 ORTHO05D005283 3.4e-47 191.8 113 76.1
RcHm_v2.0_Chr5g0013841 Rosa chinensis HOM05D004559 ORTHO05D005283 3.4e-47 191.8 124 70.2
Cc09_g09430 Coffea canephora HOM05D004559 ORTHO05D005283 4.4e-47 191.4 126 69.8
MELO3C007140.2 Cucumis melo HOM05D004559 ORTHO05D005283 7.5e-47 190.7 124 72.6
HanXRQChr04g0118611 Helianthus annuus HOM05D004559 ORTHO05D005283 7.5e-47 190.7 120 71.7
Gorai.010G166000 Gossypium raimondii HOM05D004559 ORTHO05D005283 9.8e-47 190.3 124 71.0
CAN.G650.2 Capsicum annuum HOM05D004559 ORTHO05D005283 2.2e-46 189.1 126 65.9
PSO732G0295 Papaver somniferum HOM05D004559 ORTHO05D005283 2.2e-46 189.1 119 70.6
MD05G1285000 Malus domestica HOM05D004559 ORTHO05D005283 3.7e-46 188.3 118 72.9
Peaxi162Scf01205g00119 Petunia axillaris HOM05D004559 ORTHO05D005283 6.4e-46 187.6 124 67.7
Lalb_Chr15g0086901 Lupinus albus HOM05D004559 ORTHO05D005283 8.3e-46 187.2 112 76.8
Lsat_1_v5_gn_7_30060 Lactuca sativa HOM05D004559 ORTHO05D005283 1.1e-45 186.8 120 69.2
MBI10_g02219_MAGBIO Magnolia biondii HOM05D004559 ORTHO05D005283 1.9e-45 186.0 118 72.0
ECA236G2101 Erigeron canadensis HOM05D004559 ORTHO05D005283 2.4e-45 185.7 124 66.1
Psat1g190840 Pisum sativum HOM05D004559 ORTHO05D005283 2.4e-45 185.7 124 69.4
HPP92_004048 Vanilla planifolia HOM05D004559 ORTHO05D005283 2.4e-45 185.7 118 68.6
Nitab4.5_0001755g0010 Nicotiana tabacum HOM05D004559 ORTHO05D005283 3.2e-45 185.3 124 64.5
FvH4_3g05750 Fragaria vesca HOM05D004559 ORTHO05D005283 4.1e-45 184.9 124 69.4
Oeu031256.1 Olea europaea HOM05D004559 ORTHO05D005283 4.1e-45 184.9 114 75.4
CiPaw.09G125100 Carya illinoinensis HOM05D004559 ORTHO05D005283 5.4e-45 184.5 119 68.9
CsaV3_6G051670 Cucumis sativus L. HOM05D004559 ORTHO05D005283 5.4e-45 184.5 120 70.8
DCAR_027922 Daucus carota HOM05D004559 ORTHO05D005283 7.1e-45 184.1 126 68.3
HPP92_024037 Vanilla planifolia HOM05D004559 ORTHO05D005283 7.1e-45 184.1 124 66.9
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.2e-44 183.3 104 78.8
AUR62007268 Chenopodium quinoa HOM05D004559 ORTHO05D005283 1.6e-44 183.0 130 65.4
Prupe.4G079400 Prunus persica HOM05D004559 ORTHO05D005283 1.6e-44 183.0 120 68.3
AUR62018731 Chenopodium quinoa HOM05D004559 ORTHO05D005283 2.7e-44 182.2 124 67.7
Os01g0211600 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 2.7e-44 182.2 125 67.2
EL10Ac8g19728 Beta vulgaris HOM05D004559 ORTHO05D005283 3.5e-44 181.8 125 67.2
Rhsim13G0194400 Rhododendron simsii HOM05D004559 ORTHO05D005283 6.0e-44 181.0 121 69.4
MSTRG.14771 Avicennia marina HOM05D004559 ORTHO05D005283 7.8e-44 180.6 120 69.2
Nn3g20736 Nelumbo nucifera HOM05D004559 ORTHO05D005283 1.3e-43 179.9 119 69.7
Sed0018301 Sechium edule HOM05D004559 ORTHO05D005283 1.3e-43 179.9 124 68.5
Ah.09g232660 Amaranthus hybridus HOM05D004559 ORTHO05D005283 1.7e-43 179.5 121 66.1
PGSC0003DMG400021157 Solanum tuberosum HOM05D004559 ORTHO05D005283 1.7e-43 179.5 119 65.5
Nitab4.5_0004023g0020 Nicotiana tabacum HOM05D004559 ORTHO05D005283 3.9e-43 178.3 124 62.9
Solyc02g070580.1 Solanum lycopersicum HOM05D004559 ORTHO05D005283 5.1e-43 177.9 119 64.7
Sopen02g019670 Solanum pennellii HOM05D004559 ORTHO05D005283 5.1e-43 177.9 119 64.7
Ah.14g086460 Amaranthus hybridus HOM05D001706 ORTHO05D005283 8.6e-43 177.2 120 67.5
ATR0044G015 Amborella trichopoda HOM05D004559 ORTHO05D005283 1.5e-42 176.4 113 69.0
HanXRQChr15g0480071 Helianthus annuus HOM05D004559 ORTHO05D005283 1.9e-42 176.0 113 69.0
AagrBONN_evm.TU.Sc2ySwM_344.1308 Anthoceros agrestis HOM05D004559 ORTHO05D005283 2.5e-42 175.6 119 63.9
CDE02G1201 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 5.6e-42 174.5 124 62.9
Sc17g0004960 Simmondsia chinensis HOM05D004559 ORTHO05D005283 2.8e-41 172.2 121 66.9
Os01g0210900 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 8.1e-41 170.6 114 66.7
Os01g0211200 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 8.1e-41 170.6 120 64.2
Os01g0211000 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 1.1e-40 170.2 119 64.7
SEGI_11062 Sequoiadendron giganteum HOM05D004559 ORTHO05D005283 1.1e-40 170.2 119 65.5
AagrBONN_evm.TU.Sc2ySwM_344.5146 Anthoceros agrestis HOM05D004559 ORTHO05D005283 1.4e-40 169.9 111 66.7
Mapoly0103s0038 Marchantia polymorpha HOM05D004559 ORTHO05D005283 4.0e-40 168.3 122 61.5
SMO367G0132 Selaginella moellendorffii HOM05D004559 ORTHO05D005283 1.5e-39 166.4 119 64.7
FAN11G0428 Fragaria x ananassa HOM05D004559 ORTHO05D005283 6.4e-38 161.0 113 66.4
Nn8g41110 Nelumbo nucifera HOM05D004559 ORTHO05D005283 3.2e-37 158.7 108 68.5
Lalb_Chr18g0055541 Lupinus albus HOM05D004559 ORTHO05D005283 9.2e-37 157.1 119 63.0
SGA_v2.0_scaffold106G30645 Striga asiatica HOM05D004559 ORTHO05D005283 2.1e-36 156.0 116 58.6
Mapoly0045s0151 Marchantia polymorpha HOM05D004559 ORTHO05D005283 1.3e-35 153.3 104 64.4
CDE09G0977 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 1.1e-34 150.2 110 61.8
Pp3c1_11690 Physcomitrium patens HOM05D004559 ORTHO05D005283 1.9e-34 149.4 122 53.3
HPP92_004055 Vanilla planifolia HOM05D004559 ORTHO05D005283 2.5e-34 149.1 99 65.7
Pp3c2_27810 Physcomitrium patens HOM05D004559 ORTHO05D005283 7.3e-34 147.5 120 55.8
Gorai.009G155600 Gossypium raimondii HOM05D004559 ORTHO05D005283 3.4e-31 138.7 130 54.6
CAN.G170.28 Capsicum annuum HOM05D004559 ORTHO05D005283 7.8e-28 127.5 93 60.2
Cre11.g467527 Chlamydomonas reinhardtii HOM05D004559 ORTHO05D005283 5.1e-27 124.8 104 51.9
PRCOL_00005015 Prasinoderma coloniale HOM05D004559 ORTHO05D005283 5.3e-24 114.8 108 50.0
FAN16G3572 Fragaria x ananassa HOM05D004559 ORTHO05D005283 7.1e-21 104.4 62 71.0
Gohir.D05G151801 Gossypium hirsutum HOM05D004559 ORTHO05D005283 3.5e-20 102.1 117 49.6
unitig_0.g931 Utricularia gibba HOM05D004559 ORTHO05D005283 1.5e-15 86.7 57 66.7
Cfa027208 Carpinus fangiana HOM05D004559 ORTHO05D005283 6.4e-14 81.3 115 36.5
PSO782G4380 Papaver somniferum HOM05D000287 ORTHO05D000319 9.0e-08 60.8 110 32.7
AUR62003539 Chenopodium quinoa HOM05D001176 ORTHO05D008595 1.2e-07 60.5 132 31.1
AagrBONN_evm.TU.Sc2ySwM_117.3490 Anthoceros agrestis HOM05D000093 ORTHO05D012303 1.7e-06 56.6 109 32.1
CiPaw.04G072600 Carya illinoinensis HOM05D001176 ORTHO05D008595 2.2e-06 56.2 133 29.3
AUR62017853 Chenopodium quinoa HOM05D001176 ORTHO05D008595 2.2e-06 56.2 132 29.5
Potri.019G078600 Populus trichocarpa HOM05D000287 ORTHO05D000319 2.2e-06 56.2 108 30.6
Cre02.g092350 Chlamydomonas reinhardtii HOM05D003284 ORTHO05D004050 2.9e-06 55.8 126 34.9
Zm00001eb384100 Zea mays HOM05D003785 ORTHO05D004179 2.9e-06 55.8 120 29.2
Thhalv10024764m.g Eutrema salsugineum HOM05D001176 ORTHO05D008595 3.8e-06 55.5 132 28.8
Pp3c4_28160 Physcomitrium patens HOM05D001176 ORTHO05D008595 3.8e-06 55.5 139 30.2
PGSC0003DMG400001960 Solanum tuberosum HOM05D000093 ORTHO05D000814 3.8e-06 55.5 114 29.8
VMungo0331G1423 Vigna mungo HOM05D003284 ORTHO05D004050 3.8e-06 55.5 78 41.0
arahy.Tifrunner.gnm1.ann1.M1JRW6 Arachis hypogaea HOM05D001176 ORTHO05D008595 4.9e-06 55.1 132 30.3
arahy.Tifrunner.gnm1.ann1.NAXY0P Arachis hypogaea HOM05D001176 ORTHO05D008595 4.9e-06 55.1 132 30.3
FvH4_2g31660 Fragaria vesca HOM05D003785 ORTHO05D004179 4.9e-06 55.1 71 39.4
FAN24G3339 Fragaria x ananassa HOM05D003785 ORTHO05D004179 4.9e-06 55.1 71 39.4
FAN24G3396 Fragaria x ananassa HOM05D003785 ORTHO05D004179 4.9e-06 55.1 71 39.4
MD11G1006100 Malus domestica HOM05D000287 ORTHO05D000319 4.9e-06 55.1 112 33.9
unitig_748.g7528 Utricularia gibba HOM05D003785 ORTHO05D004179 4.9e-06 55.1 113 31.9
CANSAT25G1961 Cannabis sativa HOM05D003785 ORTHO05D004179 6.5e-06 54.7 73 35.6
Lsat_1_v5_gn_3_20400 Lactuca sativa HOM05D000093 ORTHO05D000814 6.5e-06 54.7 108 33.3
Lsat_1_v5_gn_4_107501 Lactuca sativa HOM05D000093 ORTHO05D007866 6.5e-06 54.7 110 31.8
Lsat_1_v5_gn_4_110101 Lactuca sativa HOM05D000093 ORTHO05D007866 6.5e-06 54.7 110 32.7
PGR004G1688 Punica granatum HOM05D000093 ORTHO05D000835 6.5e-06 54.7 103 30.1
Solyc08g075320.4 Solanum lycopersicum HOM05D000093 ORTHO05D000814 6.5e-06 54.7 113 30.1
Sopen08g023920 Solanum pennellii HOM05D000093 ORTHO05D000814 6.5e-06 54.7 113 30.1
Glyma.03G115300 Glycine max HOM05D003284 ORTHO05D004050 8.4e-06 54.3 78 38.5
Glyma.07G110900 Glycine max HOM05D003284 ORTHO05D004050 8.4e-06 54.3 78 38.5


User provided reference genes

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