Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-84 316.2 192 100.0
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-81 305.4 197 94.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 8.7e-81 303.9 197 92.9
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.8e-78 296.2 210 89.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 7.6e-77 290.8 205 89.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 6.2e-71 271.2 204 81.9
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.6e-69 264.2 195 85.1
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 7.9e-66 254.2 199 84.4
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.5e-64 249.2 194 86.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 3.3e-64 248.8 199 82.9
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-63 246.1 212 79.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 6.3e-63 244.6 203 80.3
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 6.3e-63 244.6 203 80.3
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.1e-62 242.3 197 84.8
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 7.6e-61 237.7 197 84.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.3e-60 236.9 193 81.3
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-59 233.0 199 78.9
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-58 230.3 216 74.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-57 226.9 193 79.3
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-57 226.9 193 79.3
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-57 226.5 193 79.3
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-55 218.4 189 77.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.1e-54 215.3 201 76.6
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.2e-51 205.3 182 76.9
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.9e-45 184.9 196 61.7
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.2e-43 179.1 201 62.7
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-42 177.2 189 54.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.1e-42 176.4 193 61.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.7e-42 176.0 194 67.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.3e-41 172.9 196 65.8
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.3e-40 169.1 197 64.5
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.7e-39 166.8 185 62.7
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.7e-39 165.6 187 66.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 3.7e-39 165.6 189 49.7
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 3.7e-39 165.6 189 49.7
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 3.7e-39 165.6 210 52.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-38 164.1 193 58.5
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.2e-37 160.6 208 58.7
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.5e-37 159.1 202 57.9
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-36 156.8 193 58.5
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.7e-36 156.8 201 50.7
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-36 156.4 193 58.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.9e-36 156.0 198 51.5
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 6.5e-36 154.8 207 44.4
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.1e-35 154.1 198 52.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.1e-35 154.1 208 46.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 4.2e-35 152.1 193 57.0
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 4.2e-35 152.1 206 45.1
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.5e-35 151.8 226 50.9
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 7.2e-35 151.4 208 51.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 9.4e-35 151.0 189 47.1
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 9.4e-35 151.0 189 47.1
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 9.4e-35 151.0 189 47.1
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 9.4e-35 151.0 203 62.1
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-34 149.8 180 51.7
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 8.0e-34 147.9 197 51.8
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 8.0e-34 147.9 205 56.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 8.0e-34 147.9 202 45.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.0e-33 147.5 207 43.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.0e-33 147.5 199 57.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.4e-33 147.1 214 59.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.3e-33 146.4 209 49.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 4.0e-33 145.6 203 56.2
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 4.0e-33 145.6 203 56.2
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.2e-33 145.2 201 49.8
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.2e-33 145.2 201 50.2
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 6.7e-33 144.8 206 50.0
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 8.8e-33 144.4 203 56.2
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-32 144.1 197 56.3
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-32 144.1 198 57.6
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.5e-32 143.7 200 57.0
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 3.3e-32 142.5 163 60.1
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 4.4e-32 142.1 202 49.5
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.7e-32 141.7 211 49.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.7e-32 141.7 216 48.6
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 5.7e-32 141.7 143 62.2
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 5.7e-32 141.7 201 59.7
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 7.5e-32 141.4 148 55.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 9.7e-32 141.0 206 47.6
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.3e-31 140.6 205 48.3
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.8e-31 139.4 209 52.6
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.8e-31 138.7 148 50.0
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 6.3e-31 138.3 214 41.6
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 8.2e-31 137.9 202 48.0
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.8e-30 136.7 205 46.8
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.1e-30 136.0 202 58.9
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.1e-30 136.0 202 58.4
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.1e-30 135.6 195 49.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 7.0e-30 134.8 200 56.0
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.2e-29 134.0 220 54.5
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.2e-29 134.0 190 51.1
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-29 133.7 197 53.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.6e-29 133.7 207 52.2
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.6e-29 133.7 198 42.4
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.7e-29 132.9 192 59.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 3.5e-29 132.5 225 52.9
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.5e-29 132.5 153 57.5
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.5e-29 132.5 213 49.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 3.5e-29 132.5 201 37.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.5e-29 132.1 192 58.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.5e-29 132.1 183 44.3
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 7.7e-29 131.3 219 54.3
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.3e-28 130.6 226 46.9
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.7e-28 130.2 214 38.3
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.2e-28 129.8 195 43.1
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 6.5e-28 128.3 195 57.9
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 6.5e-28 128.3 222 39.2
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 8.5e-28 127.9 211 43.1
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 8.5e-28 127.9 193 56.5
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.1e-27 127.5 210 55.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.5e-27 127.1 218 43.1
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.9e-27 126.7 207 49.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.9e-27 126.7 219 49.3
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.9e-27 126.7 189 51.9
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.2e-27 125.9 146 46.6
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 3.2e-27 125.9 215 45.1
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.2e-27 125.9 200 42.5
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 7.2e-27 124.8 189 52.9
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.2e-27 124.8 207 50.7
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 7.2e-27 124.8 241 48.1
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.1e-26 123.2 231 48.9
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 2.1e-26 123.2 210 35.7
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-26 122.9 178 56.7
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-26 122.9 178 56.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.6e-26 122.5 192 43.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.6e-26 122.5 210 50.0
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.7e-26 122.1 194 56.7
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 4.7e-26 122.1 140 70.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-26 121.7 178 55.1
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 6.1e-26 121.7 178 55.1
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 8.0e-26 121.3 213 51.2
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.0e-26 121.3 203 53.7
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 8.0e-26 121.3 188 39.4
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 8.0e-26 121.3 169 43.8
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-25 120.9 192 49.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.4e-25 120.6 195 47.7
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.3e-25 119.8 184 58.7
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 2.3e-25 119.8 184 58.7
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 5.2e-25 118.6 202 54.5
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 5.2e-25 118.6 143 67.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 6.8e-25 118.2 185 38.9
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.5e-24 117.1 178 44.9
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.5e-24 117.1 190 41.6
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 3.4e-24 115.9 152 47.4
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 7.5e-24 114.8 198 44.9
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.7e-23 113.6 154 63.6
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.2e-23 113.2 196 54.6
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.8e-23 112.8 249 48.2
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.7e-23 112.5 154 53.9
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 8.3e-23 111.3 165 60.0
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.2e-21 107.5 234 42.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-19 100.9 178 52.2
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.9e-19 100.1 236 33.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.5e-19 99.8 188 35.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.5e-19 99.8 144 45.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 9.5e-19 97.8 195 41.0
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.6e-18 97.1 181 38.7
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 5.2e-17 92.0 199 32.7
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 5.2e-17 92.0 141 48.9
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 8.9e-17 91.3 113 71.7
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 5.7e-16 88.6 137 43.1
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.7e-16 88.6 221 42.5
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.9e-15 85.5 211 29.4
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-14 82.4 232 31.9
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 5.4e-14 82.0 41 85.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.0e-14 81.6 234 26.9
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.1e-11 74.3 87 43.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.9e-11 73.6 184 29.3
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.3e-11 72.8 123 39.8
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 9.5e-11 71.2 202 44.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.1e-10 70.1 202 43.6
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.0e-09 67.8 202 42.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.2e-09 65.5 158 27.8
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 9.8e-08 61.2 42 61.9
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 1.3e-07 60.8 42 59.5
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 2.2e-07 60.1 62 46.8
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 1.4e-06 57.4 45 57.8
Pp3c17_5610 Physcomitrium patens HOM05D022619 ORTHO05D026045 3.2e-06 56.2 49 44.9
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 3.2e-06 56.2 89 36.0
SMO347G0423 Selaginella moellendorffii HOM05D013579 ORTHO05D004077 3.2e-06 56.2 47 53.2
Pp3c14_14200 Physcomitrium patens HOM05D022619 ORTHO05D026045 9.2e-06 54.7 46 47.8


User provided reference genes

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