Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.6e-36 155.6 78 100.0
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.6e-36 155.6 78 100.0
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 1.0e-24 116.3 65 90.8
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 3.0e-24 114.8 64 90.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 3.0e-24 114.8 67 89.6
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.4e-23 110.9 67 86.6
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.3e-22 109.4 67 85.1
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.3e-22 109.4 67 85.1
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.3e-22 109.4 67 85.1
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 4.1e-21 104.4 65 86.2
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 5.4e-21 104.0 67 79.1
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.6e-20 102.4 67 79.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 4.5e-20 100.9 67 77.6
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 5.9e-20 100.5 67 79.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.7e-19 99.0 68 76.5
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.7e-19 99.0 67 77.6
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 8.6e-19 96.7 67 76.1
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.5e-18 93.2 67 74.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 4.7e-17 90.9 80 67.5
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.3e-16 88.6 67 68.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.9e-16 86.7 67 68.7
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 4.4e-15 84.3 67 65.7
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 5.7e-15 84.0 67 62.7
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 4.9e-14 80.9 78 57.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 9.2e-13 76.6 89 50.6
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 9.2e-13 76.6 89 48.3
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.6e-12 75.9 68 51.5
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 3.5e-12 74.7 89 48.3
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 3.5e-12 74.7 89 48.3
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 7.8e-12 73.6 68 55.9
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.3e-11 72.8 72 51.4
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.3e-11 72.8 73 52.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.3e-11 72.8 73 52.1
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.3e-11 72.8 68 54.4
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.3e-11 72.8 68 51.5
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.7e-11 72.4 68 52.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 2.3e-11 72.0 78 50.0
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 2.9e-11 71.6 68 54.4
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.9e-11 71.2 68 51.5
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 5.0e-11 70.9 68 50.0
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.0e-11 70.9 78 51.3
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 6.6e-11 70.5 68 52.9
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 6.6e-11 70.5 68 54.4
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.6e-11 70.5 68 52.9
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 8.6e-11 70.1 78 53.8
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 8.6e-11 70.1 78 51.3
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.1e-10 69.7 67 50.7
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.5e-10 69.3 68 50.0
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.5e-10 69.3 78 50.0
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.9e-10 68.9 81 53.1
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 1.9e-10 68.9 72 51.4
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.9e-10 68.9 68 48.5
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 3.3e-10 68.2 78 50.0
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.3e-10 68.2 78 50.0
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.3e-10 68.2 78 50.0
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.3e-10 68.2 68 50.0
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 4.3e-10 67.8 84 50.0
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 4.3e-10 67.8 74 52.7
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 4.3e-10 67.8 68 51.5
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 4.3e-10 67.8 68 51.5
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 4.3e-10 67.8 68 48.5
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 4.3e-10 67.8 68 48.5
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 4.3e-10 67.8 88 45.5
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 4.3e-10 67.8 78 51.3
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.6e-10 67.4 71 60.6
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 5.6e-10 67.4 78 48.7
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 7.3e-10 67.0 88 45.5
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 9.5e-10 66.6 71 49.3
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-09 65.9 49 71.4
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-09 65.9 49 71.4
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-09 65.9 49 71.4
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.6e-09 65.9 68 48.5
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.1e-09 65.5 78 48.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 2.1e-09 65.5 68 50.0
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 3.6e-09 64.7 71 46.5
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.6e-09 64.7 68 48.5
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.6e-09 64.7 68 47.1
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 6.2e-09 63.9 77 49.4
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 6.2e-09 63.9 68 48.5
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 8.0e-09 63.5 71 46.5
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 1.0e-08 63.2 68 48.5
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.0e-08 63.2 78 44.9
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.4e-08 62.8 78 44.9
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.4e-08 62.8 68 50.0
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.3e-08 62.0 68 48.5
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 2.3e-08 62.0 71 45.1
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.1e-08 61.6 68 48.5
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 3.1e-08 61.6 68 47.1
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 4.0e-08 61.2 68 45.6
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 5.2e-08 60.8 68 45.6
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 5.2e-08 60.8 68 45.6
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 6.8e-08 60.5 68 48.5
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 8.9e-08 60.1 93 39.8
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 8.9e-08 60.1 68 45.6
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 8.9e-08 60.1 68 48.5
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.2e-07 59.7 68 48.5
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.0e-07 58.9 68 42.6
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.6e-07 58.5 101 37.6
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.6e-07 58.5 68 47.1
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 2.6e-07 58.5 68 41.2
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.6e-07 58.5 68 45.6
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.6e-07 58.5 78 43.6
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.4e-07 58.2 68 42.6
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 4.4e-07 57.8 71 45.1
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 4.4e-07 57.8 71 45.1
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 4.4e-07 57.8 78 46.2
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 5.8e-07 57.4 69 44.9
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.3e-06 56.2 71 46.5
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 1.3e-06 56.2 68 41.2
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.7e-06 55.8 71 45.1
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.2e-06 55.5 68 44.1
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 3.7e-06 54.7 74 45.9
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 4.9e-06 54.3 68 39.7
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 8.3e-06 53.5 72 41.7


User provided reference genes

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