Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p25520 Brassica napus HOM05D001040 ORTHO05D024541 2.0e-80 302.4 154 100.0
Sp4g15500 Schrenkiella parvula HOM05D001040 ORTHO05D002311 1.3e-42 176.8 197 54.8
BolC4t27751H Brassica oleracea HOM05D001040 ORTHO05D002311 2.4e-41 172.6 191 55.5
C04p62680 Brassica napus HOM05D001040 ORTHO05D002311 9.2e-41 170.6 215 50.2
BraA04t18057Z Brassica rapa HOM05D001040 ORTHO05D002311 1.2e-40 170.2 191 54.5
A04p25530 Brassica napus HOM05D001040 ORTHO05D002311 7.8e-40 167.5 215 50.2
Thhalv10016703m.g Eutrema salsugineum HOM05D001040 ORTHO05D002311 9.5e-38 160.6 191 52.4
AL4G28820 Arabidopsis lyrata HOM05D001040 ORTHO05D002311 1.5e-35 153.3 188 50.5
AL4G29530 Arabidopsis lyrata HOM05D001040 ORTHO05D002311 5.8e-35 151.4 187 49.7
AT2G33205 Arabidopsis thaliana HOM05D001040 ORTHO05D002311 9.9e-35 150.6 188 49.5
CARHR127200 Cardamine hirsuta HOM05D001040 ORTHO05D002311 1.7e-34 149.8 190 51.6
Carub.0004s1466 Capsella rubella HOM05D001040 ORTHO05D002311 3.5e-32 142.1 188 46.8
Aa31LG5G4090 Aethionema arabicum HOM05D001040 ORTHO05D002311 1.7e-31 139.8 188 47.9
BcaB06g28661 Brassica carinata HOM05D001040 ORTHO05D002311 5.6e-30 134.8 77 84.4
BcaC02g07852 Brassica carinata HOM05D001040 ORTHO05D002311 5.6e-30 134.8 77 83.1
THA.LOC104816016 Tarenaya hassleriana HOM05D001040 ORTHO05D002311 1.3e-21 107.1 187 39.0
Dinv38292 Davidia involucrata HOM05D001040 ORTHO05D002311 1.7e-18 96.7 79 55.7
Nitab4.5_0006812g0030 Nicotiana tabacum HOM05D001040 ORTHO05D002311 2.9e-18 95.9 88 48.9
Cc03_g07060 Coffea canephora HOM05D001040 ORTHO05D002311 8.4e-18 94.4 76 55.3
BraA04t18056Z Brassica rapa HOM05D001040 ORTHO05D024541 1.4e-17 93.6 54 88.9
Manes.15G049900 Manihot esculenta HOM05D001040 ORTHO05D002311 5.4e-17 91.7 180 36.1
Nitab4.5_0003782g0110 Nicotiana tabacum HOM05D001040 ORTHO05D002311 7.1e-17 91.3 80 52.5
TAR362G1209 Trochodendron aralioides HOM05D001040 ORTHO05D002311 7.1e-17 91.3 80 53.8
Peaxi162Scf00047g01545 Petunia axillaris HOM05D001040 ORTHO05D002311 1.2e-16 90.5 81 53.1
BolC4t27748H Brassica oleracea HOM05D001040 ORTHO05D024541 1.6e-16 90.1 54 87.0
Oeu028090.1 Olea europaea HOM05D001040 ORTHO05D002311 1.6e-16 90.1 76 53.9
Potri.003G174200 Populus trichocarpa HOM05D001040 ORTHO05D002311 1.6e-16 90.1 77 55.8
Sabra03G0127700 Salix brachista HOM05D001040 ORTHO05D002311 1.6e-16 90.1 77 53.2
CAN.G1588.6 Capsicum annuum HOM05D001040 ORTHO05D002311 2.1e-16 89.7 80 50.0
Sopen09g034170 Solanum pennellii HOM05D001040 ORTHO05D002311 2.1e-16 89.7 80 52.5
MSTRG.4201 Avicennia marina HOM05D001040 ORTHO05D002311 2.7e-16 89.4 76 55.3
Rhsim09G0046500 Rhododendron simsii HOM05D001040 ORTHO05D002311 3.5e-16 89.0 76 53.9
C04p62670 Brassica napus HOM05D001040 ORTHO05D024541 4.6e-16 88.6 54 85.2
Aqoxy2G03822 Aquilegia oxysepala HOM05D001040 ORTHO05D002311 6.0e-16 88.2 77 51.9
Gorai.006G219300 Gossypium raimondii HOM05D001040 ORTHO05D002311 6.0e-16 88.2 78 57.7
Hma1.2p1_0903F.1_g234980 Hydrangea macrophylla HOM05D001040 ORTHO05D002311 6.0e-16 88.2 182 33.0
Rhsim09G0047100 Rhododendron simsii HOM05D001040 ORTHO05D002311 6.0e-16 88.2 76 51.3
Solyc09g091200.3 Solanum lycopersicum HOM05D001040 ORTHO05D002311 6.0e-16 88.2 80 51.2
Gohir.A09G201950 Gossypium hirsutum HOM05D001040 ORTHO05D002311 1.3e-15 87.0 78 56.4
TWI09G0288 Tripterygium wilfordii HOM05D001040 ORTHO05D002311 1.3e-15 87.0 80 48.8
Actinidia35939 Actinidia chinensis HOM05D001040 ORTHO05D002311 1.7e-15 86.7 80 46.2
CSS0030978 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 1.7e-15 86.7 79 49.4
Migut.G00608 Erythranthe guttata HOM05D001040 ORTHO05D002311 1.7e-15 86.7 79 51.9
SGA_v2.0_scaffold155G37229 Striga asiatica HOM05D001040 ORTHO05D002311 1.7e-15 86.7 76 53.9
Atru.chr4.1815 Acer truncatum HOM05D001040 ORTHO05D002311 2.3e-15 86.3 77 50.6
CSS0031351 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 2.3e-15 86.3 79 48.1
Phvul.007G238300 Phaseolus vulgaris HOM05D001040 ORTHO05D002311 2.3e-15 86.3 78 51.3
MD13G1230200 Malus domestica HOM05D001040 ORTHO05D002311 3.9e-15 85.5 76 55.3
MELO3C031654.2 Cucumis melo HOM05D001040 ORTHO05D002311 5.1e-15 85.1 77 50.6
Gohir.A10G120400 Gossypium hirsutum HOM05D001040 ORTHO05D002311 5.1e-15 85.1 77 55.8
Gohir.D10G146100 Gossypium hirsutum HOM05D001040 ORTHO05D002311 5.1e-15 85.1 78 56.4
AUR62035323 Chenopodium quinoa HOM05D001040 ORTHO05D002311 6.6e-15 84.7 80 50.0
Duzib268G1418 Durio zibethinus HOM05D001040 ORTHO05D002311 6.6e-15 84.7 77 57.1
vmacro00520 Vaccinium macrocarpon HOM05D001040 ORTHO05D002311 6.6e-15 84.7 76 51.3
CsaV3_3G011400 Cucumis sativus L. HOM05D001040 ORTHO05D002311 8.7e-15 84.3 77 48.1
Gorai.011G163200 Gossypium raimondii HOM05D001040 ORTHO05D002311 8.7e-15 84.3 77 55.8
Lsat_1_v5_gn_6_63101 Lactuca sativa HOM05D001040 ORTHO05D002311 8.7e-15 84.3 77 53.2
COL.COLO4_05726 Corchorus olitorius HOM05D001040 ORTHO05D002311 1.5e-14 83.6 77 55.8
Medtr1g046480 Medicago truncatula HOM05D001040 ORTHO05D002311 1.9e-14 83.2 78 50.0
Sc19g0005850 Simmondsia chinensis HOM05D001040 ORTHO05D002311 1.9e-14 83.2 77 45.5
Sed0009397 Sechium edule HOM05D001040 ORTHO05D002311 2.5e-14 82.8 77 46.8
Lju414C2T1 Lonicera japonica HOM05D001040 ORTHO05D002311 3.3e-14 82.4 95 42.1
ClCG05G003680 Citrullus lanatus HOM05D001040 ORTHO05D002311 4.3e-14 82.0 77 48.1
Gohir.D09G195966 Gossypium hirsutum HOM05D001040 ORTHO05D002311 4.3e-14 82.0 70 60.0
Prupe.1G056600 Prunus persica HOM05D001040 ORTHO05D002311 4.3e-14 82.0 77 50.6
SalBow2G1751 Salvia bowleyana HOM05D001040 ORTHO05D002311 7.3e-14 81.3 78 51.3
GSVIVG01029029001 Vitis vinifera HOM05D001040 ORTHO05D002311 7.3e-14 81.3 78 48.7
DCAR_027364 Daucus carota HOM05D001040 ORTHO05D002311 9.6e-14 80.9 80 48.8
Lalb_Chr01g0011231 Lupinus albus HOM05D001040 ORTHO05D002311 9.6e-14 80.9 78 52.6
HanXRQChr02g0059451 Helianthus annuus HOM05D001040 ORTHO05D002311 1.6e-13 80.1 77 50.6
Lj6g0006756 Lotus japonicus HOM05D001040 ORTHO05D002311 1.6e-13 80.1 78 48.7
Psat6g047480 Pisum sativum HOM05D001040 ORTHO05D002311 1.6e-13 80.1 78 48.7
Nn3g19864 Nelumbo nucifera HOM05D001040 ORTHO05D002311 2.1e-13 79.7 72 52.8
EL10Ac3g06770 Beta vulgaris HOM05D001040 ORTHO05D002311 2.8e-13 79.3 79 48.1
QL06p022753 Quercus lobata HOM05D001040 ORTHO05D002311 2.8e-13 79.3 77 46.8
Ciclev10006912m.g Citrus clementina HOM05D001040 ORTHO05D002311 3.6e-13 79.0 76 47.4
Thecc.04G214900 Theobroma cacao HOM05D001040 ORTHO05D002311 3.6e-13 79.0 77 51.9
CANSAT78G0674 Cannabis sativa HOM05D001040 ORTHO05D002311 4.8e-13 78.6 77 48.1
CiPaw.01G205800 Carya illinoinensis HOM05D001040 ORTHO05D002311 4.8e-13 78.6 77 48.1
FAN12G1971 Fragaria x ananassa HOM05D001040 ORTHO05D002311 4.8e-13 78.6 72 52.8
Glyma.20G078900 Glycine max HOM05D001040 ORTHO05D002311 4.8e-13 78.6 78 50.0
FAN17G3080 Fragaria x ananassa HOM05D001040 ORTHO05D002311 6.2e-13 78.2 78 50.0
Eucgr.H00108 Eucalyptus grandis HOM05D001040 ORTHO05D002311 1.1e-12 77.4 77 48.1
Os04g0506300 Oryza sativa ssp. japonica HOM05D001040 ORTHO05D002311 1.1e-12 77.4 77 46.8
PGR004G2858 Punica granatum HOM05D001040 ORTHO05D002311 1.1e-12 77.4 77 49.4
FAN12G2510 Fragaria x ananassa HOM05D001040 ORTHO05D002311 1.8e-12 76.6 77 49.4
Lj3C598T15 Lonicera japonica HOM05D001040 ORTHO05D002311 1.8e-12 76.6 155 32.3
RcHm_v2.0_Chr4g0396601 Rosa chinensis HOM05D001040 ORTHO05D002311 2.4e-12 76.3 77 48.1
FvH4_4g05470 Fragaria vesca HOM05D001040 ORTHO05D002311 4.0e-12 75.5 77 48.1
ATR0787G007 Amborella trichopoda HOM05D001040 ORTHO05D002311 1.2e-11 73.9 77 44.2
BcaC02g07851 Brassica carinata HOM05D000415 ORTHO05D031760 1.2e-11 73.9 50 82.0
ECA233G3786 Erigeron canadensis HOM05D001040 ORTHO05D002311 4.5e-11 72.0 72 47.2
MBI10_g16820_MAGBIO Magnolia biondii HOM05D001040 ORTHO05D002311 4.5e-11 72.0 73 53.4
Zm00001eb077960 Zea mays HOM05D001040 ORTHO05D002311 5.8e-11 71.6 77 48.1
PSO063G4658 Papaver somniferum HOM05D001040 ORTHO05D002311 1.3e-10 70.5 72 48.6
FAN07G1331 Fragaria x ananassa HOM05D001040 ORTHO05D002311 4.9e-10 68.6 80 41.2
DCAR_024707 Daucus carota HOM05D001040 ORTHO05D002311 1.4e-09 67.0 67 47.8
SEGI_23157 Sequoiadendron giganteum HOM05D001040 ORTHO05D002311 2.4e-09 66.2 78 41.0
PGR142G1923 Punica granatum HOM05D001040 ORTHO05D002311 3.2e-09 65.9 69 46.4
AagrBONN_evm.TU.Sc2ySwM_362.505 Anthoceros agrestis HOM05D001040 ORTHO05D002311 9.3e-09 64.3 72 43.1
Aqoxy7G03773 Aquilegia oxysepala HOM05D001040 ORTHO05D002311 9.3e-09 64.3 67 47.8
Mapoly0166s0004 Marchantia polymorpha HOM05D001040 ORTHO05D002311 1.2e-08 63.9 72 43.1
SMO351G0566 Selaginella moellendorffii HOM05D001040 ORTHO05D002311 1.6e-08 63.5 79 40.5
Dinv41585 Davidia involucrata HOM05D001040 ORTHO05D002311 2.1e-08 63.2 69 44.9
Cpa.g.sc23.123 Carica papaya HOM05D001040 ORTHO05D002311 2.7e-08 62.8 68 45.6
Lj7C646T5 Lonicera japonica HOM05D001040 ORTHO05D002311 2.7e-08 62.8 69 44.9
BcaB06g28662 Brassica carinata HOM05D000415 ORTHO05D031760 4.6e-08 62.0 50 72.0
PSO210G0816 Papaver somniferum HOM05D001040 ORTHO05D002311 6.0e-08 61.6 69 44.9
PSO210G6160 Papaver somniferum HOM05D001040 ORTHO05D002311 6.0e-08 61.6 69 44.9
Ca_25440_v3 Cicer arietinum L. HOM05D001040 ORTHO05D002311 7.9e-08 61.2 69 46.4
Ciclev10008536m.g Citrus clementina HOM05D001040 ORTHO05D002311 7.9e-08 61.2 78 38.5
Cpa.g.sc59.69 Carica papaya HOM05D001040 ORTHO05D002311 1.3e-07 60.5 53 54.7
Rhsim01G0094000 Rhododendron simsii HOM05D001040 ORTHO05D002311 1.3e-07 60.5 80 37.5
TWI32G0583 Tripterygium wilfordii HOM05D001040 ORTHO05D002311 1.3e-07 60.5 69 42.0
TAR624G1036 Trochodendron aralioides HOM05D001040 ORTHO05D002311 1.3e-07 60.5 69 44.9
MBI01_g16633_MAGBIO Magnolia biondii HOM05D001040 ORTHO05D002311 1.8e-07 60.1 68 45.6
Medtr8g103740 Medicago truncatula HOM05D001040 ORTHO05D002311 1.8e-07 60.1 70 45.7
SMO347G0152 Selaginella moellendorffii HOM05D001040 ORTHO05D002311 2.3e-07 59.7 72 36.1
Lj4g0024805 Lotus japonicus HOM05D001040 ORTHO05D002311 3.0e-07 59.3 77 40.3
Lalb_Chr16g0388011 Lupinus albus HOM05D001040 ORTHO05D002311 3.0e-07 59.3 78 41.0
Nn8g39250 Nelumbo nucifera HOM05D001040 ORTHO05D002311 3.0e-07 59.3 67 44.8
Potri.018G076000 Populus trichocarpa HOM05D001040 ORTHO05D002311 3.0e-07 59.3 69 42.0
Sc18g0001110 Simmondsia chinensis HOM05D001040 ORTHO05D002311 3.0e-07 59.3 69 44.9
TPR.G21717 Trifolium pratense HOM05D001040 ORTHO05D002311 3.0e-07 59.3 78 41.0
Actinidia09410 Actinidia chinensis HOM05D001040 ORTHO05D002311 3.9e-07 58.9 77 39.0
Actinidia20345 Actinidia chinensis HOM05D001040 ORTHO05D002311 3.9e-07 58.9 77 39.0
Hma1.2p1_0018F.1_g013240 Hydrangea macrophylla HOM05D001040 ORTHO05D002311 3.9e-07 58.9 69 42.0
Lalb_Chr22g0352931 Lupinus albus HOM05D001040 ORTHO05D002311 5.1e-07 58.5 72 38.9
Phvul.002G314300 Phaseolus vulgaris HOM05D001040 ORTHO05D002311 5.1e-07 58.5 79 38.0
Zm00001eb122220 Zea mays HOM05D001040 ORTHO05D002311 5.1e-07 58.5 89 36.0
Eucgr.C04122 Eucalyptus grandis HOM05D001040 ORTHO05D002311 6.7e-07 58.2 67 44.8
SMO119G0445 Selaginella moellendorffii HOM05D001040 ORTHO05D002311 6.7e-07 58.2 76 39.5
SMO163G0029 Selaginella moellendorffii HOM05D001040 ORTHO05D002311 6.7e-07 58.2 76 39.5
GSVIVG01015418001 Vitis vinifera HOM05D001040 ORTHO05D002311 6.7e-07 58.2 69 40.6
Glyma.05G232100 Glycine max HOM05D001040 ORTHO05D002311 8.7e-07 57.8 77 40.3
HanXRQChr10g0317831 Helianthus annuus HOM05D001040 ORTHO05D002311 8.7e-07 57.8 66 43.9
arahy.Tifrunner.gnm1.ann1.6GC7G5 Arachis hypogaea HOM05D001040 ORTHO05D002311 1.1e-06 57.4 77 37.7
arahy.Tifrunner.gnm1.ann1.AVG2RT Arachis hypogaea HOM05D001040 ORTHO05D002311 1.1e-06 57.4 77 37.7
Lsat_1_v5_gn_7_42300 Lactuca sativa HOM05D001040 ORTHO05D002311 1.1e-06 57.4 69 43.5
Psat7g014000 Pisum sativum HOM05D001040 ORTHO05D002311 1.5e-06 57.0 78 41.0
Duzib187G1629 Durio zibethinus HOM05D001040 ORTHO05D002311 1.9e-06 56.6 67 43.3
ECA240G0937 Erigeron canadensis HOM05D001040 ORTHO05D002311 1.9e-06 56.6 69 43.5
Eucgr.C01067 Eucalyptus grandis HOM05D001040 ORTHO05D002311 1.9e-06 56.6 66 39.4
Eucgr.C03867 Eucalyptus grandis HOM05D001040 ORTHO05D002311 1.9e-06 56.6 67 43.3
SEGI_24898 Sequoiadendron giganteum HOM05D001040 ORTHO05D002311 1.9e-06 56.6 76 31.6
vmacro20661 Vaccinium macrocarpon HOM05D001040 ORTHO05D002311 1.9e-06 56.6 69 42.0
Duzib168G0262 Durio zibethinus HOM05D001040 ORTHO05D002311 2.5e-06 56.2 67 41.8
Os01g0179800 Oryza sativa ssp. japonica HOM05D001040 ORTHO05D002311 2.5e-06 56.2 67 43.3
Pp3c14_4830 Physcomitrium patens HOM05D001040 ORTHO05D002311 2.5e-06 56.2 72 37.5
Gohir.A05G021900 Gossypium hirsutum HOM05D001040 ORTHO05D002311 3.3e-06 55.8 69 39.1
Gohir.D05G023500 Gossypium hirsutum HOM05D001040 ORTHO05D002311 3.3e-06 55.8 69 39.1
Gorai.009G023600 Gossypium raimondii HOM05D001040 ORTHO05D002311 3.3e-06 55.8 69 39.1
HanXRQChr12g0355711 Helianthus annuus HOM05D001040 ORTHO05D002311 3.3e-06 55.8 69 42.0
Lj2g0001998 Lotus japonicus HOM05D001040 ORTHO05D002311 3.3e-06 55.8 71 38.0
Glyma.08G039500 Glycine max HOM05D001040 ORTHO05D002311 4.3e-06 55.5 77 39.0
Gohir.D07G004300 Gossypium hirsutum HOM05D001040 ORTHO05D002311 4.3e-06 55.5 69 39.1
Gorai.001G003900 Gossypium raimondii HOM05D001040 ORTHO05D002311 4.3e-06 55.5 69 39.1
Lsat_1_v5_gn_5_101240 Lactuca sativa HOM05D001040 ORTHO05D002311 4.3e-06 55.5 68 39.7
Ah.10g029250 Amaranthus hybridus HOM05D001040 ORTHO05D002311 5.6e-06 55.1 70 38.6
arahy.Tifrunner.gnm1.ann1.JV2CAC Arachis hypogaea HOM05D001040 ORTHO05D002311 5.6e-06 55.1 72 37.5
ECA234G0254 Erigeron canadensis HOM05D001040 ORTHO05D002311 5.6e-06 55.1 69 42.0
HanXRQChr03g0061941 Helianthus annuus HOM05D001040 ORTHO05D002311 5.6e-06 55.1 69 42.0
Lalb_Chr14g0371391 Lupinus albus HOM05D001040 ORTHO05D002311 5.6e-06 55.1 67 44.8
MD02G1063900 Malus domestica HOM05D001040 ORTHO05D002311 5.6e-06 55.1 80 35.0
Manes.16G070300 Manihot esculenta HOM05D001040 ORTHO05D002311 5.6e-06 55.1 79 34.2
COL.COLO4_34889 Corchorus olitorius HOM05D001040 ORTHO05D002311 7.4e-06 54.7 67 43.3
Dinv36610 Davidia involucrata HOM05D001040 ORTHO05D002311 7.4e-06 54.7 66 40.9
Oeu017574.1 Olea europaea HOM05D001040 ORTHO05D002311 7.4e-06 54.7 69 39.1
Sc08g0007340 Simmondsia chinensis HOM05D001040 ORTHO05D002311 7.4e-06 54.7 69 40.6
Thecc.09G113400 Theobroma cacao HOM05D001040 ORTHO05D002311 7.4e-06 54.7 65 44.6
CSS0007430 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 9.6e-06 54.3 69 40.6
CSS0026222 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 9.6e-06 54.3 69 40.6
CSS0026888 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002311 9.6e-06 54.3 69 40.6


User provided reference genes

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