Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 2.9e-31 137.9 68 100.0
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 5.9e-24 113.6 56 100.0
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 5.0e-23 110.5 56 96.4
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.9e-22 108.6 56 94.6
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 5.5e-22 107.1 56 92.9
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 5.2e-20 100.5 56 89.3
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 5.2e-20 100.5 56 89.3
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 5.2e-20 100.5 56 89.3
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.5e-19 99.0 56 87.5
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-19 98.6 56 87.5
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 2.0e-19 98.6 56 87.5
AT2G32190 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.6e-19 98.2 61 77.0
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 7.5e-19 96.7 56 83.9
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.8e-17 92.0 56 80.4
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.4e-17 91.7 56 80.4
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 5.9e-16 87.0 59 76.3
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.7e-15 85.5 57 77.2
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 3.8e-15 84.3 58 75.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.0e-15 84.0 58 72.4
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.5e-14 80.5 59 74.6
AL4G27560 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.7e-13 78.2 59 69.5
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 2.7e-13 78.2 59 72.9
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.0e-12 76.3 60 65.0
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 4.0e-12 74.3 60 61.7
Aa31LG1G19350 Aethionema arabicum HOM05D002385 ORTHO05D002245 3.7e-10 67.8 59 66.1
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 4.8e-10 67.4 58 63.8
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.3e-10 67.0 59 61.0
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 8.3e-10 66.6 58 65.5
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 7.0e-09 63.5 56 64.3
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 9.1e-09 63.2 58 65.5
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 9.1e-09 63.2 58 65.5
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 3.5e-08 61.2 58 63.8
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 5.9e-08 60.5 58 60.3
BcaB08g37322 Brassica carinata HOM05D002385 ORTHO05D002245 2.9e-07 58.2 64 48.4
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.8e-07 57.8 57 57.9
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 3.8e-07 57.8 55 58.2
BcaB04g20534 Brassica carinata HOM05D002385 ORTHO05D002245 5.0e-07 57.4 61 50.8
Ciclev10013503m.g Citrus clementina HOM05D002385 ORTHO05D002245 5.0e-07 57.4 36 72.2
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.0e-07 57.4 56 57.1
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 5.0e-07 57.4 57 59.6
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 5.0e-07 57.4 57 59.6
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.0e-07 57.4 69 49.3
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.6e-07 57.0 48 62.5
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 8.6e-07 56.6 54 63.0
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 8.6e-07 56.6 57 61.4
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.5e-06 55.8 57 54.4
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-06 55.8 59 55.9
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.5e-06 55.8 59 59.3
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.9e-06 55.5 56 57.1
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 2.5e-06 55.1 45 64.4
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 3.3e-06 54.7 57 61.4
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 3.3e-06 54.7 46 65.2
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.3e-06 54.7 40 65.0
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.2e-06 54.3 56 51.8
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.2e-06 54.3 59 54.2
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.2e-06 54.3 59 55.9
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 7.2e-06 53.5 58 53.4
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 7.2e-06 53.5 57 59.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 9.5e-06 53.1 59 55.9
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 9.5e-06 53.1 38 65.8


User provided reference genes

Program Settings