Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p24330 Brassica napus HOM05D002855 ORTHO05D032761 1.9e-156 555.8 282 100.0
BcaC02g11494 Brassica carinata HOM05D002855 ORTHO05D032761 4.4e-150 534.6 281 96.8
C04p14740 Brassica napus HOM05D002855 ORTHO05D032761 4.4e-150 534.6 281 96.8
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 5.1e-122 441.4 270 84.4
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 2.2e-117 426.0 270 82.6
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 8.5e-117 424.1 270 82.2
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 8.5e-117 424.1 270 82.2
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 1.9e-116 422.9 270 81.9
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 1.3e-112 410.2 270 79.3
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 5.3e-95 351.7 279 68.1
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 8.3e-80 301.2 273 63.7
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 1.0e-77 294.3 279 62.0
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 3.3e-76 289.3 279 60.6
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 5.7e-73 278.5 279 58.8
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 4.1e-71 272.3 286 59.8
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 4.8e-35 152.5 296 38.9
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 8.1e-35 151.8 240 43.3
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 1.9e-23 114.0 280 36.4
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 1.5e-20 104.4 59 94.9
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 1.5e-20 104.4 59 94.9
A05p10970 Brassica napus HOM05D000295 ORTHO05D014480 3.7e-19 99.8 61 88.5
C03p33030 Brassica napus HOM05D003192 ORTHO05D014480 3.7e-19 99.8 61 88.5
BraA05t20043Z Brassica rapa HOM05D000295 ORTHO05D014480 3.7e-19 99.8 61 88.5
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 1.1e-18 98.2 59 88.1
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 1.5e-17 94.4 59 84.7
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 2.6e-17 93.6 59 83.1
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 3.8e-16 89.7 243 35.8
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 4.9e-16 89.4 242 36.4
BcaB03g12313 Brassica carinata HOM05D003192 ORTHO05D014480 1.1e-15 88.2 59 86.4
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 1.1e-15 88.2 59 86.4
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 1.1e-15 88.2 59 86.4
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.1e-15 88.2 59 86.4
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.2e-15 86.3 222 36.9
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 4.2e-15 86.3 285 29.5
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 3.5e-14 83.2 59 78.0
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.5e-14 83.2 247 33.2
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 4.6e-14 82.8 260 31.9
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 1.3e-13 81.3 59 76.3
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.3e-13 81.3 256 31.6
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 3.9e-13 79.7 292 32.2
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.9e-13 79.7 258 30.6
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.9e-13 79.7 220 35.5
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.9e-13 79.7 256 31.2
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 5.1e-13 79.3 289 30.8
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 1.5e-12 77.8 59 71.2
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 9.6e-12 75.1 224 33.9
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.6e-11 74.3 259 32.0
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 6.3e-11 72.4 287 31.0
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 8.2e-11 72.0 313 28.8
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 8.2e-11 72.0 58 65.5
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 1.4e-10 71.2 59 66.1
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 1.4e-10 71.2 66 60.6
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 4.1e-10 69.7 281 30.2
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 5.3e-10 69.3 82 52.4
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 5.3e-10 69.3 253 30.0
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 5.3e-10 69.3 269 31.6
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 6.9e-10 68.9 289 30.4
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 1.2e-09 68.2 281 30.6
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 2.0e-09 67.4 280 30.0
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 3.4e-09 66.6 269 29.7
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 4.5e-09 66.2 227 31.7
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 7.6e-09 65.5 201 34.8
Duzib264G0817 Durio zibethinus HOM05D003192 ORTHO05D014480 1.0e-08 65.1 65 55.4
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 1.0e-08 65.1 239 32.2
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 1.3e-08 64.7 282 27.3
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 1.7e-08 64.3 279 29.4
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 2.2e-08 63.9 54 68.5
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.9e-08 63.5 241 29.9
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 5.0e-08 62.8 66 54.5
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 5.0e-08 62.8 66 57.6
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 1.1e-07 61.6 245 30.6
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.1e-07 61.6 286 29.0
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 1.1e-07 61.6 51 64.7
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.4e-07 61.2 66 56.1
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.4e-07 61.2 260 30.4
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 1.4e-07 61.2 280 27.9
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 1.4e-07 61.2 268 28.7
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 1.9e-07 60.8 117 39.3
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.9e-07 60.8 239 30.5
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 1.9e-07 60.8 242 30.6
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.9e-07 60.8 241 31.1
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.9e-07 60.8 264 31.1
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.9e-07 60.8 305 26.6
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.5e-07 60.5 66 54.5
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 4.2e-07 59.7 52 61.5
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 4.2e-07 59.7 82 45.1
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.2e-07 59.7 66 53.0
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 5.5e-07 59.3 275 28.7
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 7.2e-07 58.9 277 28.9
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 9.3e-07 58.5 66 51.5
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 1.6e-06 57.8 59 55.9
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.6e-06 57.8 75 52.0
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 2.1e-06 57.4 75 52.0
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.5e-06 56.6 75 52.0
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 4.6e-06 56.2 59 55.9
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 4.6e-06 56.2 59 55.9
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 6.1e-06 55.8 241 29.0
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 7.9e-06 55.5 268 27.6
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 7.9e-06 55.5 264 26.9
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 7.9e-06 55.5 59 52.5
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 7.9e-06 55.5 59 52.5


User provided reference genes

Program Settings