Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-51 206.1 97 100.0
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 3.4e-33 144.8 69 97.1
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.7e-24 115.9 54 100.0
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 8.4e-24 113.6 54 98.1
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 8.4e-24 113.6 54 98.1
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 8.4e-24 113.6 54 98.1
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.1e-23 113.2 54 96.3
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.4e-23 112.1 53 96.2
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 2.4e-23 112.1 53 94.3
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 4.2e-23 111.3 69 79.7
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 4.2e-23 111.3 69 79.7
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 3.5e-22 108.2 54 87.0
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 1.0e-21 106.7 53 84.9
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 1.0e-21 106.7 53 84.9
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 1.3e-21 106.3 53 88.7
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.3e-21 105.5 53 88.7
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 3.9e-21 104.8 53 86.8
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 3.9e-21 104.8 53 86.8
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 3.9e-21 104.8 53 84.9
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.9e-21 104.8 53 83.0
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 5.1e-21 104.4 53 84.9
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 5.1e-21 104.4 53 86.8
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 6.7e-21 104.0 54 87.0
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.7e-21 103.6 54 85.2
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 8.7e-21 103.6 54 83.3
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 1.1e-20 103.2 53 84.9
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.1e-20 103.2 53 84.9
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 1.1e-20 103.2 53 84.9
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 1.5e-20 102.8 53 84.9
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 1.9e-20 102.4 54 81.5
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.9e-20 102.4 53 83.0
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.5e-20 102.1 54 83.3
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.5e-20 102.1 54 83.3
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 4.3e-20 101.3 54 81.5
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 4.3e-20 101.3 53 84.9
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 4.3e-20 101.3 53 83.0
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.6e-20 100.9 53 81.1
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 7.4e-20 100.5 54 85.2
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 7.4e-20 100.5 53 83.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 9.6e-20 100.1 54 79.6
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 1.3e-19 99.8 53 79.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.3e-19 99.8 53 81.1
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.6e-19 99.4 54 83.3
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.1e-19 99.0 54 81.5
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 2.8e-19 98.6 53 81.1
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 2.8e-19 98.6 54 75.9
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 2.8e-19 98.6 52 82.7
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.8e-19 98.6 53 81.1
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.8e-19 98.6 53 81.1
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 4.8e-19 97.8 64 70.3
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 4.8e-19 97.8 53 79.2
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 4.8e-19 97.8 53 79.2
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 4.8e-19 97.8 53 75.5
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 6.2e-19 97.4 60 71.7
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 8.2e-19 97.1 54 77.8
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 1.1e-18 96.7 52 80.8
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 2.4e-18 95.5 52 76.9
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 2.4e-18 95.5 54 79.6
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 2.4e-18 95.5 53 77.4
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 3.1e-18 95.1 53 83.0
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 4.0e-18 94.7 53 77.4
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.3e-18 94.4 54 74.1
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 6.9e-18 94.0 52 84.6
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 2.0e-17 92.4 54 75.9
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.0e-16 90.1 50 78.0
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.0e-16 90.1 59 69.5
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.7e-16 89.4 53 77.4
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 1.7e-16 89.4 46 82.6
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 1.7e-16 89.4 45 82.2
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.7e-16 89.4 53 75.5
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 2.2e-16 89.0 53 71.7
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.2e-16 89.0 46 84.8
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.9e-16 88.6 46 84.8
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.9e-16 88.6 46 84.8
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.9e-16 88.6 53 75.5
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.8e-16 88.2 53 75.5
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 4.9e-16 87.8 49 75.5
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 6.5e-16 87.4 45 80.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.9e-15 85.9 53 77.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 9.3e-15 83.6 46 80.4
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 2.1e-14 82.4 48 68.8
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 3.5e-14 81.6 87 52.9
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 3.5e-14 81.6 54 72.2
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 2.3e-13 79.0 50 68.0
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.0e-13 78.6 63 57.1
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 3.0e-13 78.6 53 69.8
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 3.0e-13 78.6 47 72.3
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.9e-13 78.2 95 45.3
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 8.7e-13 77.0 54 63.0
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 8.7e-13 77.0 64 54.7
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-12 76.6 54 63.0
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 1.1e-12 76.6 53 67.9
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.1e-12 76.6 47 72.3
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 1.5e-12 76.3 43 76.7
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.3e-12 75.1 48 68.8
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 5.7e-12 74.3 48 68.8
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.3e-11 73.2 53 67.9
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.6e-11 72.8 53 66.0
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.2e-11 72.4 45 68.9
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.4e-10 68.9 31 96.8
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 6.9e-10 67.4 44 72.7
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-09 66.6 31 93.5
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.4e-09 65.1 34 85.3
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 3.4e-09 65.1 46 56.5
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 7.6e-09 63.9 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.7e-08 62.8 47 66.0
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 3.8e-08 61.6 37 73.0
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 8.5e-08 60.5 80 47.5
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 8.5e-08 60.5 80 47.5
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.4e-07 59.7 47 68.1
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.9e-07 59.3 60 50.0
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 9.3e-07 57.0 31 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 2.1e-06 55.8 36 66.7


User provided reference genes

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