Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.6e-175 618.6 311 100.0
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 5.0e-171 604.4 311 96.8
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.9e-170 602.4 329 93.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 3.6e-169 598.2 309 96.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.4e-157 559.7 309 91.3
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.0e-155 553.5 311 90.7
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.0e-155 552.0 309 90.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.1e-152 543.5 309 89.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.4e-149 532.3 310 86.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.2e-149 531.9 312 84.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.9e-147 525.0 312 84.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 9.9e-143 510.4 309 85.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 4.3e-138 495.0 309 81.6
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.5e-127 458.4 309 73.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.3e-121 440.3 275 80.0
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.4e-120 436.8 275 78.2
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.0e-120 435.3 300 75.0
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.0e-120 435.3 300 75.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.0e-120 434.1 300 74.7
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.4e-119 432.2 244 82.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.3e-118 430.3 307 71.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-118 430.3 277 74.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-118 430.3 244 82.0
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.9e-118 429.1 247 81.4
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 3.8e-118 428.7 245 84.1
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.9e-118 428.3 242 83.5
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 8.4e-118 427.6 273 76.2
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 8.4e-118 427.6 244 82.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.1e-117 427.2 305 71.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.4e-117 426.8 285 72.3
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.4e-117 426.8 271 76.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.4e-117 426.8 241 83.4
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.4e-117 426.8 241 83.4
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.5e-117 426.0 308 70.5
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.2e-117 425.6 319 67.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.2e-117 425.6 244 81.6
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.2e-117 425.6 258 78.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 5.5e-117 424.9 298 70.5
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 5.5e-117 424.9 308 69.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.1e-117 424.5 243 81.5
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 7.1e-117 424.5 265 76.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.2e-116 423.7 286 71.7
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.6e-116 423.3 245 81.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.5e-116 422.2 243 80.7
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.6e-116 421.8 258 77.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.1e-116 421.4 240 82.5
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 6.1e-116 421.4 242 80.2
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 7.9e-116 421.0 286 73.1
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.0e-115 420.6 278 73.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.0e-115 420.6 246 80.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-115 420.2 269 75.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.8e-115 419.9 243 79.8
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.0e-115 419.1 275 73.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 5.1e-115 418.3 242 81.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 8.7e-115 417.5 242 80.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.1e-114 417.2 277 72.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.9e-114 416.4 274 72.3
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.5e-114 416.0 253 77.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.7e-114 414.8 247 77.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 5.7e-114 414.8 246 79.3
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.4e-114 414.5 278 72.3
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 7.4e-114 414.5 242 80.2
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.7e-114 414.1 271 73.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.3e-113 413.7 272 72.8
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.2e-113 412.9 276 73.6
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 4.8e-113 411.8 304 68.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.8e-113 411.8 285 69.5
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.3e-113 411.4 281 70.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.4e-112 410.2 300 67.7
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.8e-112 409.8 242 78.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 4.1e-112 408.7 246 77.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 9.0e-112 407.5 275 70.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 5.9e-111 404.8 286 69.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.9e-111 404.8 261 75.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.9e-111 404.8 246 76.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.9e-110 402.5 246 76.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 8.5e-110 401.0 309 66.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.1e-109 400.6 294 66.3
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.5e-109 399.4 270 70.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-108 397.1 311 63.7
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.6e-108 395.6 244 75.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.0e-107 394.0 242 75.6
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.8e-107 393.3 308 63.0
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.9e-107 392.1 300 66.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 5.1e-107 391.7 244 75.0
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 8.8e-107 391.0 285 67.4
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 7.4e-106 387.9 267 68.5
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.7e-106 387.5 213 85.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.7e-105 386.7 278 66.2
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 6.3e-105 384.8 279 67.7
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.3e-104 381.7 285 66.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.9e-104 381.3 248 73.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.4e-103 379.0 243 72.0
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 4.5e-103 378.6 286 67.8
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.5e-101 372.9 397 51.4
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 5.5e-101 371.7 256 71.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 5.5e-101 371.7 212 81.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 5.5e-101 371.7 282 68.4
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.6e-100 369.0 234 76.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.6e-95 352.8 241 71.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 4.5e-95 352.1 371 52.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.9e-95 351.7 347 53.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 9.4e-93 344.4 261 69.0
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.6e-92 343.6 248 67.3
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 4.7e-92 342.0 269 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.3e-89 334.0 283 55.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 4.8e-89 332.0 243 68.3
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 9.1e-88 327.8 212 74.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 4.2e-85 318.9 271 55.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.0e-83 312.4 248 66.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.3e-81 304.7 234 66.7
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.5e-79 298.9 224 72.3
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.6e-74 283.1 167 79.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.6e-74 283.1 213 61.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.1e-72 276.2 281 48.8
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.5e-69 267.3 177 74.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.4e-67 260.8 165 75.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.6e-66 256.5 258 47.7
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 9.8e-66 254.6 254 52.0
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.2e-65 253.4 159 74.8
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 6.6e-62 241.9 141 80.1
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 8.9e-59 231.5 252 44.4
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.5e-58 228.4 140 80.0
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.7e-57 227.3 206 58.3
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 4.9e-57 225.7 191 60.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-56 224.6 306 47.4
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 8.6e-54 214.9 138 72.5
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-53 214.5 136 80.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-53 214.5 136 80.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.1e-52 210.3 131 75.6
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.8e-52 209.9 113 86.7
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 6.8e-51 205.3 238 45.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.8e-50 202.2 153 66.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.7e-49 199.5 164 66.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-48 198.0 193 52.3
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.2e-48 196.4 126 74.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.7e-47 193.4 109 80.7
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.3e-45 186.0 110 78.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 7.3e-45 185.3 100 83.0
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.0e-43 179.5 99 79.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.4e-40 171.0 239 37.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.9e-38 162.9 92 80.4
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.9e-37 160.6 242 38.4
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.4e-35 154.5 247 37.2
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.2e-34 151.4 112 61.6
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.6e-34 148.7 82 80.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.4e-32 143.7 76 84.2
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.2e-31 141.4 106 65.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.7e-31 140.2 77 81.8
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.1e-27 126.7 75 72.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 9.0e-27 125.2 66 81.8
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-26 124.8 88 72.7
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.9e-22 109.8 59 81.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 3.9e-22 109.8 244 30.3
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 4.3e-21 106.3 65 81.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.3e-21 106.3 56 78.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.1e-20 104.0 96 58.3
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.4e-16 90.5 89 56.2
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.5e-15 86.7 113 46.9
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-14 85.1 48 77.1
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.4e-13 79.0 133 35.3
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 9.6e-13 78.6 61 47.5
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 8.1e-12 75.5 45 75.6
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.0e-10 70.9 88 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.4e-08 64.7 102 35.3
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 3.9e-06 56.6 75 40.0


User provided reference genes

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