Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.2e-270 936.0 504 100.0
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.9e-260 902.1 504 96.6
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.0e-257 892.1 508 95.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 3.1e-255 884.8 504 95.6
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 3.1e-255 884.8 504 95.6
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.0e-250 869.8 496 95.6
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.4e-247 859.4 507 92.1
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 8.5e-245 850.1 507 90.5
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 7.5e-241 837.0 507 88.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.7e-240 834.7 507 88.8
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 4.9e-240 834.3 507 88.6
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.4e-239 832.0 507 88.6
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.6e-219 765.0 516 81.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 6.2e-203 711.1 510 77.6
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.3e-189 666.0 507 71.8
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.6e-188 661.4 506 72.3
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.8e-186 656.4 508 71.5
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.7e-184 649.8 509 70.3
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.2e-184 649.4 491 71.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-184 649.4 486 72.6
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.9e-184 649.0 489 72.8
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.4e-184 647.5 508 70.7
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 8.4e-184 647.5 508 70.9
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.4e-183 646.7 506 70.2
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.4e-183 646.0 486 72.2
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.5e-183 644.8 508 71.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.6e-182 643.3 510 71.2
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.1e-182 642.9 494 71.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.6e-182 641.7 505 73.1
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.0e-181 640.6 480 72.1
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.8e-181 639.8 504 69.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.8e-181 639.8 486 71.6
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 6.7e-181 637.9 480 73.5
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 6.7e-181 637.9 507 70.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.5e-180 636.7 488 71.9
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 4.3e-180 635.2 507 69.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.6e-180 634.8 507 70.2
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.4e-180 634.4 507 69.2
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.3e-179 633.6 485 71.3
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.1e-179 632.9 502 70.1
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.1e-179 632.9 500 71.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.8e-179 632.5 502 70.1
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.8e-179 632.5 488 71.5
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.8e-179 632.5 503 70.4
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.1e-178 630.6 499 69.7
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 5.3e-178 628.2 499 69.9
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.6e-177 625.9 499 69.3
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 5.8e-177 624.8 487 69.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 7.6e-177 624.4 488 69.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.7e-176 623.2 487 71.3
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.4e-175 620.2 497 69.8
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.9e-175 619.8 474 71.7
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.9e-175 619.8 484 69.8
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.2e-175 619.0 488 69.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 5.5e-175 618.2 500 70.0
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.3e-175 617.5 474 71.7
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 7.9e-174 614.4 508 67.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.3e-173 613.6 505 68.5
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-173 613.6 489 70.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.0e-173 612.5 505 68.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.0e-173 612.5 507 67.1
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 5.1e-173 611.7 530 66.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.5e-172 610.1 485 69.9
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 5.7e-172 608.2 504 68.7
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.6e-172 607.4 517 65.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.6e-171 606.7 496 68.3
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 3.7e-171 605.5 505 67.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.4e-170 603.6 506 67.6
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.8e-170 603.2 485 69.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.1e-170 602.1 496 67.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 4.1e-170 602.1 488 68.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.0e-169 599.7 499 67.3
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.0e-169 599.7 506 66.8
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.4e-167 593.6 504 66.1
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.2e-167 592.4 475 69.3
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 4.2e-167 592.0 499 66.5
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.6e-166 589.0 518 64.5
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 3.6e-166 589.0 487 67.6
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 4.6e-166 588.6 492 66.7
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.3e-165 587.0 505 66.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.1e-165 585.1 504 65.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.8e-163 579.3 511 64.8
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.8e-163 579.3 487 66.3
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 4.8e-163 578.6 496 64.3
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 6.3e-163 578.2 492 67.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.1e-162 575.9 498 71.5
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 3.4e-161 572.4 511 65.8
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 8.5e-160 567.8 430 73.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.4e-157 560.5 503 63.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-157 560.5 508 62.4
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.9e-157 558.9 498 64.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 5.1e-157 558.5 487 64.5
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 6.7e-157 558.1 512 63.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.1e-156 557.4 478 65.7
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.4e-156 555.4 487 65.9
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 7.4e-156 554.7 511 63.0
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 8.2e-155 551.2 508 62.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.4e-154 549.7 481 65.3
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.1e-154 548.9 507 62.5
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 1.5e-153 547.0 511 61.6
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 5.9e-153 545.0 447 69.1
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.9e-151 540.0 508 62.2
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.2e-151 538.9 509 61.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.0e-149 532.7 381 75.6
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 5.2e-149 531.9 390 81.3
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 5.2e-149 531.9 390 81.3
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-144 517.3 358 75.7
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 3.2e-143 512.7 432 66.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.4e-138 496.5 496 60.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.0e-134 481.5 484 58.7
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 5.2e-133 478.8 540 55.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.5e-132 477.2 486 57.6
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.8e-122 443.7 453 57.2
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 5.9e-121 438.7 474 57.4
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.9e-119 433.7 394 65.5
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.3e-119 432.6 450 58.4
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.1e-118 430.3 386 60.9
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.5e-108 397.5 414 57.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 5.4e-106 389.0 381 61.9
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.0e-92 344.0 207 82.1
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 8.6e-88 328.6 221 81.0
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.2e-84 318.2 413 48.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 9.3e-82 308.5 426 47.4
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.1e-81 307.4 322 53.4
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 6.0e-81 305.8 253 68.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.3e-78 298.1 460 43.5
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-77 293.1 220 71.4
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.9e-75 287.0 288 64.6
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.1e-73 280.8 399 44.9
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.1e-58 229.2 202 66.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.8e-56 224.6 372 41.4
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.0e-56 223.8 276 49.6
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.0e-51 208.8 382 37.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.7e-49 200.7 327 39.4
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.1e-45 185.7 227 51.5
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.5e-39 168.3 147 67.3
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.7e-39 165.6 97 83.5
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 9.1e-37 159.1 93 84.9
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-33 147.5 107 64.5
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.2e-30 136.0 88 77.3
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.4e-29 135.2 137 60.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 4.7e-25 120.2 122 58.2
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.8e-21 108.2 185 40.5
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 4.5e-20 103.6 70 88.6
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.6e-11 72.8 59 62.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.6e-11 72.8 59 62.7
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.9e-10 71.6 97 43.3
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 2.1e-09 68.2 65 60.0
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.0e-09 66.2 59 57.6
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 8.9e-08 62.8 71 52.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.3e-06 58.9 50 70.0
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.7e-06 57.4 44 63.6


User provided reference genes

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