Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.2e-44 181.8 86 100.0
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 2.7e-42 174.9 86 95.3
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 3.0e-41 171.4 86 93.0
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 6.7e-41 170.2 86 90.7
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 8.8e-41 169.9 86 93.0
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.5e-40 169.1 98 85.7
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.0e-40 168.7 95 87.4
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.6e-40 168.3 83 94.0
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 5.7e-40 167.2 84 92.9
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 2.2e-39 165.2 82 92.7
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 2.8e-39 164.9 84 89.3
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.8e-39 164.9 115 73.9
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 3.7e-39 164.5 86 87.2
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.4e-38 162.5 82 90.2
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.8e-38 162.2 82 89.0
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 5.5e-35 150.6 80 86.2
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 9.4e-35 149.8 83 83.1
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.4e-35 149.8 83 83.1
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 9.4e-35 149.8 83 83.1
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.2e-34 149.4 80 87.5
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.6e-34 147.9 83 81.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.6e-34 147.9 83 81.9
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 6.1e-34 147.1 85 77.6
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 8.0e-34 146.7 87 80.5
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.0e-33 146.4 83 80.7
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.0e-32 142.1 79 77.2
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 4.4e-32 141.0 139 57.6
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 4.4e-32 141.0 86 73.3
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 9.7e-32 139.8 79 75.9
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 72.1
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.3e-31 139.4 85 72.9
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 79.8
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-31 139.0 86 72.1
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-31 139.0 86 72.1
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.7e-31 137.9 86 72.1
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.3e-31 137.1 82 74.4
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.4e-30 136.0 79 77.2
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-30 136.0 79 77.2
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.1e-30 134.4 79 75.9
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.1e-30 134.4 79 75.9
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 68.6
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.3e-30 134.0 78 75.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 5.3e-30 134.0 82 70.7
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 69.8
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 7.0e-30 133.7 82 69.5
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 7.0e-30 133.7 82 70.7
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 68.6
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.2e-29 132.9 86 68.6
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 2.6e-29 131.7 82 72.0
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.6e-29 131.7 82 70.7
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.5e-29 131.3 86 69.8
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 5.9e-29 130.6 82 68.3
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.3e-28 129.4 82 67.1
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.3e-28 129.4 82 68.3
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 78 71.8
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 78 71.8
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.3e-28 129.4 86 68.6
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.7e-28 129.0 91 64.8
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 2.2e-28 128.6 91 63.7
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.9e-28 128.3 83 67.5
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 3.8e-28 127.9 83 67.5
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 3.8e-28 127.9 75 70.7
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 5.0e-28 127.5 79 67.1
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 6.5e-28 127.1 83 72.3
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 6.5e-28 127.1 86 67.4
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 6.5e-28 127.1 86 66.3
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 8.5e-28 126.7 83 71.1
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 70.9
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.9e-27 125.6 86 64.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.5e-27 125.2 86 64.0
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.5e-27 125.2 73 76.7
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.5e-27 125.2 79 69.6
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 64.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 64.0
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.5e-27 124.0 76 67.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 7.2e-27 123.6 86 64.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 1.6e-26 122.5 83 63.9
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.1e-26 122.1 82 67.1
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 2.1e-26 122.1 81 64.2
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.1e-26 122.1 79 67.1
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.1e-26 122.1 79 69.6
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 2.7e-26 121.7 86 62.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.6e-26 121.3 73 68.5
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.7e-26 120.9 84 66.7
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 8.0e-26 120.2 79 64.6
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 8.0e-26 120.2 76 67.1
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 62.8
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.4e-25 119.4 86 62.8
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.4e-25 119.4 76 65.8
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.4e-25 119.4 76 67.1
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-25 119.0 86 62.8
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 2.3e-25 118.6 78 73.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.3e-25 118.6 76 65.8
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 2.3e-25 118.6 76 65.8
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 3.0e-25 118.2 79 72.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.0e-25 118.2 86 62.8
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 68 75.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 4.0e-25 117.9 76 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 6.7e-25 117.1 76 65.8
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.2e-24 116.3 72 68.1
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.2e-24 116.3 68 72.1
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.5e-24 115.9 63 77.8
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-24 115.9 86 60.5
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.5e-24 115.9 82 62.2
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.0e-24 115.5 83 69.9
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 2.6e-24 115.2 71 73.2
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 2.6e-24 115.2 71 73.2
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.6e-24 115.2 82 63.4
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 3.3e-24 114.8 63 76.2
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 60.5
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 4.4e-24 114.4 68 75.0
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.7e-24 114.0 78 62.8
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 5.7e-24 114.0 70 71.4
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 7.5e-24 113.6 86 60.5
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 9.7e-24 113.2 86 59.3
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 9.7e-24 113.2 82 62.2
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.7e-23 112.5 82 61.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.2e-23 112.1 86 58.1
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 8.3e-23 110.2 54 90.7
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 8.3e-23 110.2 82 61.0
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 8.3e-23 110.2 77 64.9
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.1e-22 109.8 59 81.4
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.8e-22 109.0 65 70.8
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.8e-22 109.0 82 59.8
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 2.4e-22 108.6 96 55.2
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.3e-22 107.5 68 70.6
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 9.1e-22 106.7 85 57.6
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.2e-21 106.3 65 67.7
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 2.0e-21 105.5 68 61.8
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.7e-21 105.1 59 74.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.7e-21 105.1 81 60.5
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.3e-20 102.8 71 57.7
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.2e-20 102.1 58 75.9
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 2.2e-20 102.1 72 61.1
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.2e-20 102.1 54 74.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.9e-20 101.7 85 57.6
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 2.9e-20 101.7 74 59.5
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.2e-19 98.2 56 76.8
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.2e-18 96.3 53 71.7
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.6e-18 95.9 69 62.3
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.6e-18 95.9 52 73.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.6e-18 94.7 82 57.3
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.0e-17 93.2 52 75.0
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.3e-17 92.0 72 58.3
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 4.0e-17 91.3 63 68.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 5.2e-17 90.9 76 60.5
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 8.8e-17 90.1 93 48.4
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.2e-16 89.7 98 48.0
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.6e-16 88.6 67 55.2
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 8.3e-15 83.6 70 58.6
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.4e-14 82.8 72 56.9
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 2.9e-12 75.1 59 57.6
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 2.5e-11 72.0 59 54.2
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 9.5e-11 70.1 59 59.3
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 6.1e-10 67.4 52 61.5
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 6.1e-10 67.4 69 44.9
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 1.3e-07 59.7 68 33.8
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 1.7e-07 59.3 44 54.5
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 2.4e-06 55.5 40 55.0


User provided reference genes

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