Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p22010 Brassica napus HOM05D000659 ORTHO05D028294 3.5e-25 117.5 59 100.0
BraA04t17769Z Brassica rapa HOM05D000659 ORTHO05D028294 4.6e-25 117.1 58 100.0
CARHR122280 Cardamine hirsuta HOM05D000659 ORTHO05D000505 3.1e-13 77.8 41 90.2
Thhalv10016796m.g Eutrema salsugineum HOM05D000659 ORTHO05D000505 5.3e-13 77.0 41 87.8
Sp4g11860 Schrenkiella parvula HOM05D000659 ORTHO05D000505 1.2e-12 75.9 41 85.4
BcaB02g10226 Brassica carinata HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
BcaC02g11038 Brassica carinata HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
A07p19460 Brassica napus HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
C04p21910 Brassica napus HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
C04p21920 Brassica napus HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
BolC4t23710H Brassica oleracea HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
BraA07t29652Z Brassica rapa HOM05D000659 ORTHO05D000505 4.5e-12 73.9 45 75.6
Aa31LG5G7190 Aethionema arabicum HOM05D000659 ORTHO05D000505 1.0e-11 72.8 41 82.9
AL4G23610 Arabidopsis lyrata HOM05D000659 ORTHO05D000505 1.3e-11 72.4 39 87.2
Carub.0004s1004 Capsella rubella HOM05D000659 ORTHO05D000505 1.7e-11 72.0 39 84.6
AT2G29050 Arabidopsis thaliana HOM05D000659 ORTHO05D000505 5.0e-11 70.5 39 82.1
Manes.01G172500 Manihot esculenta HOM05D000659 ORTHO05D000505 1.0e-08 62.8 41 68.3
Thecc.09G320200 Theobroma cacao HOM05D000659 ORTHO05D000505 1.0e-08 62.8 41 65.9
TWI75G0518 Tripterygium wilfordii HOM05D000659 ORTHO05D000505 1.8e-08 62.0 41 65.9
GSVIVG01024943001 Vitis vinifera HOM05D000659 ORTHO05D000505 2.3e-08 61.6 41 65.9
Cpa.g.sc81.133 Carica papaya HOM05D000659 ORTHO05D000505 5.1e-08 60.5 41 61.0
Gohir.D03G124200 Gossypium hirsutum HOM05D000659 ORTHO05D000505 6.7e-08 60.1 41 61.0
Gorai.003G130900 Gossypium raimondii HOM05D000659 ORTHO05D000505 6.7e-08 60.1 41 61.0
Manes.02G131700 Manihot esculenta HOM05D000659 ORTHO05D000505 6.7e-08 60.1 41 63.4
Potri.001G241300 Populus trichocarpa HOM05D000659 ORTHO05D000505 8.8e-08 59.7 41 63.4
Haze_24112 Corylus avellana HOM05D000659 ORTHO05D000505 1.1e-07 59.3 41 63.4
MD11G1100200 Malus domestica HOM05D000659 ORTHO05D000505 1.5e-07 58.9 45 57.8
TWI79G0968 Tripterygium wilfordii HOM05D000659 ORTHO05D000505 1.5e-07 58.9 41 63.4
Sed0023661 Sechium edule HOM05D000659 ORTHO05D000505 2.0e-07 58.5 39 59.0
Atru.chr3.3945 Acer truncatum HOM05D000659 ORTHO05D000505 2.6e-07 58.2 41 61.0
Cfa011515 Carpinus fangiana HOM05D000659 ORTHO05D000505 2.6e-07 58.2 41 61.0
Gohir.A03G043100 Gossypium hirsutum HOM05D000659 ORTHO05D000505 2.6e-07 58.2 41 58.5
MD03G1090500 Malus domestica HOM05D000659 ORTHO05D000505 2.6e-07 58.2 45 57.8
Sabra16G0145700 Salix brachista HOM05D000659 ORTHO05D000505 2.6e-07 58.2 41 58.5
Glyma.15G037600 Glycine max HOM05D000659 ORTHO05D000505 4.4e-07 57.4 46 58.7
PGR119G2445 Punica granatum HOM05D000659 ORTHO05D000505 5.7e-07 57.0 45 53.3
Sc12g0001470 Simmondsia chinensis HOM05D000659 ORTHO05D000505 5.7e-07 57.0 39 59.0
Prupe.6G074600 Prunus persica HOM05D000659 ORTHO05D000505 7.4e-07 56.6 45 53.3
Duzib168G0711 Durio zibethinus HOM05D000659 ORTHO05D000505 9.7e-07 56.2 41 61.0
THA.LOC104815787 Tarenaya hassleriana HOM05D000659 ORTHO05D000505 9.7e-07 56.2 41 65.9
Potri.009G031900 Populus trichocarpa HOM05D000659 ORTHO05D000505 1.3e-06 55.8 41 56.1
QL01p031553 Quercus lobata HOM05D000659 ORTHO05D000505 1.3e-06 55.8 40 57.5
MELO3C020625.2 Cucumis melo HOM05D000659 ORTHO05D000505 1.7e-06 55.5 41 53.7
TPR.G34324 Trifolium pratense HOM05D000659 ORTHO05D000505 2.2e-06 55.1 38 52.6
EL10Ac7g16031 Beta vulgaris HOM05D000659 ORTHO05D000505 2.8e-06 54.7 41 53.7
Lalb_Chr19g0137871 Lupinus albus HOM05D000659 ORTHO05D000505 3.7e-06 54.3 41 51.2
MD11G1101200 Malus domestica HOM05D000659 ORTHO05D000505 3.7e-06 54.3 51 52.9
Medtr2g097210 Medicago truncatula HOM05D000659 ORTHO05D000505 4.8e-06 53.9 39 53.8
GSVIVG01034160001 Vitis vinifera HOM05D000659 ORTHO05D000505 4.8e-06 53.9 44 52.3
Atru.chr8.1985 Acer truncatum HOM05D000659 ORTHO05D000505 6.3e-06 53.5 42 50.0
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 6.3e-06 53.5 41 53.7
CsaV3_1G034330 Cucumis sativus L. HOM05D000659 ORTHO05D000505 6.3e-06 53.5 41 48.8
Duzib170G0196 Durio zibethinus HOM05D000659 ORTHO05D000505 6.3e-06 53.5 41 56.1
FvH4_3g36420 Fragaria vesca HOM05D000659 ORTHO05D000505 6.3e-06 53.5 45 46.7
FAN11G0746 Fragaria x ananassa HOM05D000659 ORTHO05D000505 6.3e-06 53.5 45 46.7
FAN25G2711 Fragaria x ananassa HOM05D000659 ORTHO05D000505 6.3e-06 53.5 45 46.7
MD11G1106000 Malus domestica HOM05D000659 ORTHO05D028294 6.3e-06 53.5 42 59.5
RcHm_v2.0_Chr5g0065311 Rosa chinensis HOM05D000659 ORTHO05D000505 6.3e-06 53.5 45 48.9
Sabra09G0022600 Salix brachista HOM05D000659 ORTHO05D000505 6.3e-06 53.5 41 56.1
Gohir.D05G095400 Gossypium hirsutum HOM05D000659 ORTHO05D000505 8.2e-06 53.1 40 55.0
Gorai.009G098700 Gossypium raimondii HOM05D000659 ORTHO05D000505 8.2e-06 53.1 40 55.0
Lj3g0008496 Lotus japonicus HOM05D000659 ORTHO05D000505 8.2e-06 53.1 44 47.7
MD11G1107900 Malus domestica HOM05D000659 ORTHO05D028294 8.2e-06 53.1 43 53.5


User provided reference genes

Program Settings