Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.5e-127 459.5 238 100.0
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.9e-122 442.6 238 97.1
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.9e-122 442.6 238 97.1
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.8e-120 436.0 238 96.2
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 7.6e-119 430.6 239 95.8
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 3.7e-113 411.8 238 92.4
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.3e-105 386.7 241 85.1
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 3.7e-105 385.2 240 85.8
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 4.5e-103 378.3 242 84.3
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 3.2e-101 372.1 242 83.1
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.5e-98 363.2 242 82.2
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 4.8e-97 358.2 244 79.9
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 4.2e-93 345.1 243 79.0
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 7.2e-93 344.4 241 78.4
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 1.5e-90 336.7 245 76.3
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 3.7e-89 332.0 189 90.5
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.2e-87 327.0 240 76.7
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.5e-85 319.3 240 73.3
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.5e-74 283.5 165 88.5
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 4.2e-69 265.4 195 68.7
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 5.5e-69 265.0 243 59.7
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.0e-67 259.2 238 60.9
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 2.6e-66 256.1 221 61.5
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.7e-65 253.4 232 59.1
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.7e-65 253.4 238 60.1
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.2e-65 253.1 236 58.9
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 2.2e-65 253.1 224 59.8
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 2.8e-65 252.7 183 69.9
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 2.8e-65 252.7 203 65.5
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 2.8e-65 252.7 234 59.0
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 4.9e-65 251.9 195 67.2
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.1e-64 250.8 230 60.9
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.8e-64 250.0 203 66.0
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.8e-64 250.0 225 59.1
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.4e-64 249.6 189 66.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 3.1e-64 249.2 231 58.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 3.1e-64 249.2 234 59.8
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 7.0e-64 248.1 236 58.9
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 9.2e-64 247.7 190 65.8
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 2.0e-63 246.5 190 65.8
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.0e-63 246.5 228 57.9
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 2.7e-63 246.1 186 66.7
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 4.5e-63 245.4 194 64.4
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 5.9e-63 245.0 193 65.8
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 7.8e-63 244.6 223 61.0
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.0e-62 244.2 225 60.0
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.3e-62 243.8 214 59.3
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.7e-62 243.4 209 59.8
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 2.3e-62 243.0 195 66.7
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 2.3e-62 243.0 204 62.3
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 3.8e-62 242.3 231 58.4
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 5.0e-62 241.9 247 55.5
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 6.6e-62 241.5 193 63.2
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 6.6e-62 241.5 217 60.4
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.9e-61 240.0 202 62.9
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.9e-61 240.0 229 59.0
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.5e-61 239.6 212 60.4
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 2.5e-61 239.6 168 70.8
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 4.3e-61 238.8 214 61.2
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 7.3e-61 238.0 157 73.2
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 7.3e-61 238.0 222 57.2
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.1e-60 236.5 200 61.5
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 2.1e-60 236.5 221 60.2
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 2.1e-60 236.5 200 61.5
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 4.7e-60 235.3 193 62.2
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 6.1e-60 235.0 196 64.3
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 8.0e-60 234.6 209 60.8
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.4e-59 233.8 236 55.9
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.8e-59 233.4 235 55.3
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 2.3e-59 233.0 160 71.9
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.3e-59 233.0 224 58.9
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 6.8e-59 231.5 233 57.5
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 8.9e-59 231.1 238 54.2
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-58 229.9 233 54.5
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.4e-58 229.2 233 55.4
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 3.4e-58 229.2 197 64.0
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 3.4e-58 229.2 226 57.1
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 3.4e-58 229.2 233 54.1
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.4e-58 228.8 197 63.5
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 4.4e-58 228.8 191 64.4
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 4.4e-58 228.8 202 61.9
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 4.4e-58 228.8 226 54.9
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 5.8e-58 228.4 244 51.6
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-57 226.9 233 53.2
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-57 226.9 233 54.9
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.9e-57 226.1 157 69.4
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 6.4e-57 224.9 225 54.2
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 8.3e-57 224.6 238 56.7
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.1e-56 222.2 238 55.5
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.0e-55 219.9 235 55.7
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 3.5e-55 219.2 226 54.4
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 7.8e-55 218.0 153 69.3
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.7e-54 216.9 197 57.9
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 5.0e-54 215.3 156 67.3
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 7.3e-53 211.5 244 52.9
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 4.7e-52 208.8 225 54.2
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.5e-50 203.8 156 65.4
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.9e-48 196.8 140 71.4
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.3e-45 186.0 156 59.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.2e-44 184.1 154 59.1
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.2e-44 181.8 155 60.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-43 180.6 155 60.0
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.4e-42 176.0 184 51.1
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 2.2e-41 173.3 156 59.0
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 6.4e-41 171.8 235 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 2.1e-39 166.8 155 53.5
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 4.6e-39 165.6 156 57.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.0e-34 150.2 195 46.2
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 8.4e-33 144.8 195 44.6
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 8.4e-33 144.8 157 47.1
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 6.6e-30 135.2 156 46.2
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.5e-29 134.0 91 71.4
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 7.3e-29 131.7 82 75.6
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 3.6e-28 129.4 168 42.3
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.8e-26 122.1 82 72.0
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.4e-24 117.5 159 41.5
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 1.2e-23 114.4 80 67.5
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.2e-23 114.4 152 45.4
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 7.8e-23 111.7 159 46.5
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.0e-22 111.3 119 52.1
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-21 105.9 151 45.0
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-21 105.9 151 43.7
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 8.1e-20 101.7 152 42.1
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 5.8e-18 95.5 68 64.7
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.6e-15 87.4 198 33.8
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.0e-14 84.7 124 41.1
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.8e-12 76.6 96 46.9
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 4.0e-11 72.8 118 39.8
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.4e-10 69.7 96 41.7
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 7.6e-10 68.6 103 40.8
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.9e-09 66.6 104 43.3
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.6e-07 60.8 147 27.2
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 2.1e-07 60.5 145 29.7
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.7e-07 60.1 145 29.7
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 3.5e-07 59.7 127 29.1
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 3.5e-07 59.7 200 27.0
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 7.9e-07 58.5 131 27.5
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 7.9e-07 58.5 131 27.5
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 1.0e-06 58.2 169 25.4
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 1.0e-06 58.2 131 28.2
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.3e-06 57.8 124 28.2
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 1.3e-06 57.8 146 29.5
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 3.9e-06 56.2 245 25.7
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 5.1e-06 55.8 128 27.3
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 5.1e-06 55.8 134 29.1
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 5.1e-06 55.8 134 29.1
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 6.7e-06 55.5 172 26.7
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 6.7e-06 55.5 131 26.7
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 6.7e-06 55.5 146 28.1
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 8.7e-06 55.1 119 28.6
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 8.7e-06 55.1 127 27.6
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 8.7e-06 55.1 131 26.7


User provided reference genes

Program Settings