Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 6.2e-58 227.3 116 100.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 6.2e-58 227.3 116 100.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 2.0e-56 222.2 116 97.4
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 2.6e-56 221.9 116 96.6
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 2.6e-56 221.9 116 96.6
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 7.9e-53 210.3 116 91.4
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.9e-46 189.1 116 81.0
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.6e-45 186.0 116 79.3
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.6e-45 186.0 116 79.3
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.7e-45 185.3 116 79.3
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.3e-44 182.2 116 80.2
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.9e-44 181.4 119 80.7
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 4.8e-42 174.5 116 75.0
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 6.3e-42 174.1 117 75.2
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.4e-41 172.2 117 76.9
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 9.1e-41 170.2 116 70.7
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.5e-40 169.5 111 73.9
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.1e-33 146.7 111 68.5
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 5.5e-22 107.8 111 49.5
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.5e-19 99.8 115 47.8
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.5e-19 99.8 115 47.0
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.4e-19 98.6 115 47.0
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 5.7e-19 97.8 115 45.2
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 7.5e-19 97.4 107 53.3
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 9.7e-19 97.1 107 49.5
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.7e-18 96.3 106 53.8
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 6.3e-18 94.4 115 49.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.3e-18 94.0 115 47.8
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 8.3e-18 94.0 104 53.8
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.1e-17 93.6 115 45.2
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.4e-17 93.2 111 50.5
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.8e-17 92.8 115 47.0
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.4e-17 92.4 111 49.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.4e-17 92.4 111 49.5
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.4e-17 92.4 115 44.3
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 2.4e-17 92.4 116 46.6
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.1e-17 92.0 117 48.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 3.1e-17 92.0 115 44.3
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.1e-17 92.0 111 50.5
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.1e-17 91.7 111 49.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.1e-17 91.7 115 44.3
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 4.1e-17 91.7 113 46.0
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 7.0e-17 90.9 115 45.2
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 7.0e-17 90.9 109 49.5
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 9.1e-17 90.5 115 45.2
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 9.1e-17 90.5 109 47.7
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-16 90.1 115 42.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-16 89.7 114 48.2
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-16 89.7 115 46.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.5e-16 88.6 108 49.1
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.5e-16 88.6 115 44.3
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 5.9e-16 87.8 106 42.5
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 5.9e-16 87.8 115 44.3
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 7.7e-16 87.4 107 43.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.0e-15 87.0 115 42.6
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.3e-15 86.7 110 42.7
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.3e-15 86.7 115 43.5
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.3e-15 86.7 106 47.2
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.7e-15 86.3 109 46.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.7e-15 86.3 117 42.7
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.2e-15 85.9 116 42.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 6.5e-15 84.3 104 45.2
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.5e-15 84.0 118 43.2
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 8.5e-15 84.0 115 43.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 8.5e-15 84.0 115 42.6
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 8.5e-15 84.0 111 44.1
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.1e-14 83.6 98 50.0
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.5e-14 83.2 106 46.2
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.9e-14 82.8 106 43.4
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.5e-14 82.4 106 42.5
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 3.2e-14 82.0 107 44.9
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 4.2e-14 81.6 109 45.0
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 7.2e-14 80.9 115 41.7
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-13 80.1 101 42.6
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.2e-13 80.1 110 44.5
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.1e-13 79.3 110 44.5
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.6e-13 78.6 108 42.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 3.6e-13 78.6 107 44.9
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 4.7e-13 78.2 109 43.1
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.7e-13 78.2 115 41.7
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 4.7e-13 78.2 117 38.5
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.1e-13 77.8 115 41.7
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.1e-13 77.8 115 40.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.0e-12 77.0 104 44.2
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.0e-12 77.0 115 42.6
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 1.4e-12 76.6 113 44.2
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.8e-12 76.3 121 43.0
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 2.3e-12 75.9 109 39.4
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 4.0e-12 75.1 110 38.2
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 6.8e-12 74.3 113 40.7
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.8e-12 73.9 102 42.2
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 8.8e-12 73.9 111 42.3
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 8.8e-12 73.9 107 41.1
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-11 73.6 114 39.5
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-11 73.2 114 41.2
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.5e-11 73.2 121 42.1
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.0e-11 72.8 103 44.7
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 5.7e-11 71.2 116 44.0
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 7.5e-11 70.9 113 40.7
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 9.8e-11 70.5 108 43.5
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.3e-10 70.1 106 39.6
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 1.7e-10 69.7 116 41.4
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.2e-10 69.3 107 42.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.2e-10 69.3 108 39.8
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.2e-10 69.3 103 39.8
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.8e-10 68.9 116 43.1
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.1e-09 67.0 114 38.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.8e-09 66.2 114 36.0
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.8e-09 66.2 114 36.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.4e-09 65.9 108 40.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.1e-09 65.5 109 40.4
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 4.1e-09 65.1 117 36.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 7.0e-09 64.3 115 37.4
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 7.7e-08 60.8 114 38.6


User provided reference genes

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