Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.5e-47 192.6 105 100.0
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.4e-45 186.0 100 100.0
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 1.7e-30 136.0 92 83.7
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 2.9e-30 135.2 92 81.5
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 2.9e-30 135.2 78 91.0
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 1.9e-29 132.5 80 90.0
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 1.9e-29 132.5 80 90.0
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 4.2e-29 131.3 79 89.9
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 4.2e-29 131.3 79 89.9
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 9.4e-29 130.2 80 88.8
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 9.4e-29 130.2 79 88.6
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 9.4e-29 130.2 79 88.6
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 1.2e-28 129.8 78 88.5
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 3.6e-28 128.3 102 73.5
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 4.7e-28 127.9 96 78.1
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 8.0e-28 127.1 79 88.6
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 2.3e-27 125.6 80 87.5
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 4.0e-27 124.8 80 87.5
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 9.7e-26 120.2 81 82.7
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 4.8e-25 117.9 78 79.5
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 8.2e-25 117.1 78 78.2
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 8.2e-25 117.1 79 81.0
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 1.1e-24 116.7 78 79.5
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 1.8e-24 115.9 78 82.1
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 2.4e-24 115.5 78 76.9
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 3.1e-24 115.2 78 75.6
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 4.1e-24 114.8 78 76.9
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 5.3e-24 114.4 78 75.6
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 1.6e-23 112.8 80 78.8
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 1.6e-23 112.8 78 75.6
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.0e-23 112.5 93 68.8
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 2.0e-23 112.5 78 74.4
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 2.0e-23 112.5 78 74.4
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 2.0e-23 112.5 95 64.2
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 2.7e-23 112.1 78 76.9
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 3.5e-23 111.7 78 74.4
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 3.5e-23 111.7 93 68.8
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 5.9e-23 110.9 78 78.2
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 5.9e-23 110.9 78 80.8
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 5.9e-23 110.9 78 80.8
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 7.7e-23 110.5 78 76.9
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 1.0e-22 110.2 78 71.8
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.0e-22 110.2 78 78.2
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.0e-22 110.2 99 68.7
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 1.3e-22 109.8 91 67.0
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 1.7e-22 109.4 78 76.9
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 1.7e-22 109.4 78 71.8
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 1.7e-22 109.4 82 75.6
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.7e-22 109.4 82 75.6
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 1.7e-22 109.4 78 76.9
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.7e-22 109.4 78 74.4
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 2.2e-22 109.0 78 74.4
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 2.2e-22 109.0 79 75.9
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 2.2e-22 109.0 78 78.2
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.2e-22 109.0 77 77.9
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.2e-22 109.0 77 77.9
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 2.9e-22 108.6 78 78.2
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 2.9e-22 108.6 91 68.1
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 2.9e-22 108.6 80 77.5
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 2.9e-22 108.6 91 65.9
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 2.9e-22 108.6 80 71.2
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 2.9e-22 108.6 78 74.4
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 2.9e-22 108.6 78 74.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 5.0e-22 107.8 79 74.7
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 5.0e-22 107.8 78 76.9
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 5.0e-22 107.8 91 67.0
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 6.5e-22 107.5 78 73.1
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 6.5e-22 107.5 87 69.0
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 6.5e-22 107.5 78 73.1
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 6.5e-22 107.5 77 76.6
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 6.5e-22 107.5 78 70.5
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 8.5e-22 107.1 78 73.1
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 8.5e-22 107.1 78 73.1
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 8.5e-22 107.1 91 63.7
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 8.5e-22 107.1 78 67.9
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 8.5e-22 107.1 83 71.1
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 8.5e-22 107.1 79 72.2
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 1.5e-21 106.3 78 71.8
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 1.5e-21 106.3 79 77.2
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 1.5e-21 106.3 78 75.6
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.9e-21 105.9 82 72.0
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 1.9e-21 105.9 78 73.1
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 1.9e-21 105.9 78 71.8
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 2.5e-21 105.5 82 69.5
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 2.5e-21 105.5 82 69.5
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 3.2e-21 105.1 78 74.4
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 3.2e-21 105.1 78 74.4
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 3.2e-21 105.1 91 69.2
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 4.2e-21 104.8 78 73.1
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 9.4e-21 103.6 93 64.5
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 1.2e-20 103.2 78 71.8
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.2e-20 103.2 78 70.5
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 1.6e-20 102.8 78 70.5
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 1.6e-20 102.8 78 70.5
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.6e-20 102.8 82 69.5
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 2.1e-20 102.4 76 72.4
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 2.1e-20 102.4 98 62.2
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 2.1e-20 102.4 93 63.4
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 3.6e-20 101.7 98 64.3
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 4.7e-20 101.3 78 71.8
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 2.3e-19 99.0 78 71.8
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 3.0e-19 98.6 92 63.0
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 4.0e-19 98.2 78 64.1
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 5.2e-19 97.8 82 67.1
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 9.8e-18 93.6 78 66.7
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 1.7e-17 92.8 76 65.8
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 2.8e-17 92.0 82 63.4
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 3.7e-17 91.7 78 62.8
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 1.1e-16 90.1 93 55.9
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 5.4e-16 87.8 77 66.2
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 1.2e-15 86.7 77 59.7
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 1.6e-15 86.3 65 73.8
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 4.5e-15 84.7 73 65.8
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.0e-14 83.6 82 57.3
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 2.2e-14 82.4 66 72.7
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 2.2e-14 82.4 66 71.2
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 2.9e-14 82.0 68 66.2
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 4.2e-13 78.2 109 42.2
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 3.6e-12 75.1 76 57.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 1.8e-11 72.8 75 54.7
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 1.2e-10 70.1 78 56.4
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.7e-09 66.2 50 74.0
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.7e-09 66.2 46 78.3
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.7e-09 66.2 46 78.3
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 3.7e-09 65.1 96 39.6
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 1.1e-08 63.5 42 76.2
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 2.9e-06 55.5 79 50.6


User provided reference genes

Program Settings