Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 6.4e-307 1056.6 535 100.0
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 6.4e-307 1056.6 535 100.0
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 2.0e-276 955.3 543 92.3
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 7.6e-276 953.4 543 92.3
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 7.6e-276 953.4 543 92.3
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 6.5e-259 897.1 548 86.5
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 1.3e-243 846.3 544 83.3
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 2.1e-233 812.4 546 79.9
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 6.8e-224 780.8 546 77.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 3.0e-216 755.4 554 73.8
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 8.1e-185 651.0 503 70.8
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 8.1e-185 651.0 541 65.4
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.7e-171 606.7 418 79.2
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 9.3e-165 584.3 416 77.6
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.6e-153 547.0 567 55.6
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.8e-153 545.4 558 55.9
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.2e-153 545.0 558 56.3
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 8.2e-153 544.7 558 56.3
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 2.6e-151 539.7 558 54.3
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.7e-150 537.0 560 55.2
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 4.2e-149 532.3 570 54.9
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.6e-148 530.4 562 53.2
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.1e-148 530.0 559 53.0
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 6.0e-148 528.5 564 54.8
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 7.9e-148 528.1 562 52.8
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 2.3e-147 526.6 569 52.4
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.5e-146 523.9 573 54.1
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.9e-146 523.5 559 54.4
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.2e-145 520.0 555 53.7
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 8.2e-145 518.1 543 52.3
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.1e-144 517.7 548 51.8
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 9.0e-144 514.6 544 53.3
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.2e-143 514.2 556 52.3
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 2.0e-143 513.5 555 51.4
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 4.5e-143 512.3 564 51.8
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.0e-142 511.1 559 51.0
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.0e-142 511.1 565 51.5
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.9e-142 509.6 516 54.1
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 6.5e-142 508.4 556 52.0
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.5e-142 508.4 564 53.9
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 8.5e-142 508.1 568 51.8
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 2.5e-141 506.5 548 52.4
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.2e-141 505.8 597 49.4
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 7.2e-141 505.0 563 51.0
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 9.3e-141 504.6 559 51.3
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.1e-140 503.4 586 49.7
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 1.0e-139 501.1 518 53.1
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 3.0e-139 499.6 572 50.7
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.9e-139 499.2 524 53.4
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 5.1e-139 498.8 499 53.7
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.3e-138 495.7 599 48.6
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 7.4e-138 495.0 534 51.7
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.7e-137 493.8 557 50.4
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 6.3e-137 491.9 567 50.4
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 4.1e-136 489.2 552 49.6
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 4.1e-136 489.2 582 49.1
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 1.2e-135 487.6 566 49.3
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 3.8e-134 482.6 566 48.4
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.1e-133 481.1 569 47.8
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.1e-133 481.1 570 51.1
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.4e-133 480.7 526 49.8
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 7.2e-133 478.4 554 48.7
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 3.6e-132 476.1 571 47.6
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 4.7e-132 475.7 570 47.4
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 7.9e-132 474.9 484 53.1
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.0e-131 474.6 509 51.9
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.8e-131 473.8 521 51.4
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 6.7e-131 471.9 605 47.4
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.1e-130 471.1 463 55.9
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.2e-129 466.8 567 49.4
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 4.8e-129 465.7 511 51.9
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.3e-129 465.3 567 49.4
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 7.7e-127 458.4 597 45.4
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.9e-125 453.8 558 47.5
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.3e-123 446.8 559 45.4
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.8e-123 444.9 556 49.1
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.1e-122 444.5 569 43.6
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.5e-122 444.1 496 51.2
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.4e-122 442.6 550 46.4
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 2.2e-121 440.3 564 47.2
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 9.1e-120 434.9 525 48.6
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.2e-119 434.5 558 47.5
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 3.2e-117 426.4 452 49.8
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.4e-112 410.2 551 44.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 9.1e-112 408.3 417 53.7
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.8e-110 402.9 554 44.0
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 6.8e-107 392.1 568 41.9
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.0e-106 390.6 582 41.8
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.3e-105 387.9 555 42.9
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 6.3e-105 385.6 553 44.5
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 5.4e-104 382.5 572 41.8
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 7.0e-104 382.1 544 42.5
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.2e-103 381.3 556 44.2
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.2e-103 381.3 563 41.9
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.7e-102 377.5 387 54.8
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 2.3e-102 377.1 526 44.1
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.1e-101 374.8 555 44.3
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.6e-100 370.9 441 49.9
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.0e-99 368.2 354 53.1
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.8e-99 367.5 508 43.7
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 2.8e-97 360.1 523 43.6
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.4e-96 357.1 467 45.2
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.5e-93 347.8 527 40.0
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 2.1e-92 344.0 453 44.8
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.3e-91 340.5 540 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 9.2e-88 328.6 528 38.3
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.1e-85 321.6 457 45.3
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 9.8e-82 308.5 431 42.2
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 5.4e-80 302.8 479 40.9
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 8.6e-78 295.4 487 40.5
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.6e-76 290.0 541 35.9
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 7.5e-74 282.3 572 34.8
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 8.3e-73 278.9 465 39.4
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 2.4e-72 277.3 218 64.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 7.1e-72 275.8 267 56.6
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 3.3e-69 266.9 394 40.9
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.1e-67 260.4 362 43.6
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 8.9e-67 258.8 337 44.2
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.9e-64 251.1 289 49.1
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 1.1e-59 235.3 444 38.3
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 2.6e-58 230.7 310 43.5
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 1.6e-52 211.5 385 37.4
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 2.4e-48 197.6 337 38.9
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 7.4e-45 186.0 371 34.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.2e-40 170.6 144 59.0
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 1.8e-38 164.9 192 47.4
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 6.0e-31 139.8 128 57.8
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 2.5e-29 134.4 82 85.4
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.8e-27 128.3 97 61.9
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.5e-26 125.2 179 40.8
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.3e-22 111.3 434 27.9
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 5.3e-19 100.1 95 52.6
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 9.1e-19 99.4 82 61.0
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.5e-18 97.1 69 65.2
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 5.9e-18 96.7 68 69.1
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.9e-17 94.4 68 60.3
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 9.4e-16 89.4 220 30.5
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 7.4e-13 79.7 55 67.3
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 6.3e-12 76.6 92 48.9
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 5.3e-11 73.6 49 71.4
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 1.4e-08 65.5 110 32.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.2e-07 62.4 110 33.6
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 2.7e-07 61.2 163 28.2
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 8.0e-07 59.7 106 30.2
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 8.0e-07 59.7 110 31.8
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.0e-06 59.3 133 28.6
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.4e-06 58.9 108 32.4
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 3.9e-06 57.4 100 31.0
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 3.9e-06 57.4 116 31.0
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 3.9e-06 57.4 100 34.0
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 5.2e-06 57.0 110 31.8
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 6.7e-06 56.6 169 26.6
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 6.7e-06 56.6 102 32.4
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 8.8e-06 56.2 110 31.8
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 8.8e-06 56.2 110 29.1


User provided reference genes

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