Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p15520 Brassica napus HOM05D011849 ORTHO05D001736 1.6e-106 389.4 195 100.0
BraA04t17188Z Brassica rapa HOM05D011849 ORTHO05D001736 5.1e-105 384.4 195 99.0
BcaB06g27734 Brassica carinata HOM05D011849 ORTHO05D001736 6.9e-102 374.0 195 95.4
BcaC02g08858 Brassica carinata HOM05D011849 ORTHO05D001736 4.2e-99 364.8 195 93.8
C04p49780 Brassica napus HOM05D011849 ORTHO05D001736 4.2e-99 364.8 195 93.8
BolC4t26569H Brassica oleracea HOM05D011849 ORTHO05D001736 4.2e-99 364.8 195 93.8
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 4.4e-72 275.0 197 74.6
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 8.3e-71 270.8 196 74.0
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 6.4e-63 244.6 198 66.7
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 1.5e-59 233.4 202 65.3
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 1.7e-55 219.9 201 62.2
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 1.3e-39 167.2 197 51.8
AT5G39140 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 7.1e-38 161.4 153 61.4
AT5G39170 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 6.0e-37 158.3 155 60.0
Aa31LG9G16720 Aethionema arabicum HOM05D011849 ORTHO05D001736 1.2e-24 117.5 199 42.7
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.0e-13 78.6 213 31.9
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 4.3e-11 72.4 214 33.2
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 1.6e-10 70.5 199 34.2
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 8.2e-10 68.2 227 28.2
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 1.8e-09 67.0 206 34.0
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.8e-09 67.0 202 30.7
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 4.0e-09 65.9 148 35.1
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 4.0e-09 65.9 204 32.8
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 5.3e-09 65.5 209 31.1
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.5e-08 63.9 206 29.6
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 2.0e-08 63.5 146 34.9
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 3.4e-08 62.8 59 55.9
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 3.4e-08 62.8 179 33.0
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 3.4e-08 62.8 218 29.8
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 4.5e-08 62.4 194 30.9
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 5.8e-08 62.0 208 28.8
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 7.6e-08 61.6 241 29.0
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 7.6e-08 61.6 59 54.2
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 7.6e-08 61.6 191 31.9
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 7.6e-08 61.6 232 28.4
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.0e-07 61.2 213 30.0
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 1.0e-07 61.2 224 29.9
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.3e-07 60.8 215 27.4
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.3e-07 60.8 190 33.7
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.3e-07 60.8 186 32.3
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 1.3e-07 60.8 154 34.4
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.3e-07 60.8 199 26.6
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.7e-07 60.5 186 32.3
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.9e-07 59.7 59 52.5
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.9e-07 59.7 234 29.1
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 3.8e-07 59.3 180 32.8
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 3.8e-07 59.3 215 29.3
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 4.9e-07 58.9 176 34.1
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 4.9e-07 58.9 60 58.3
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 6.5e-07 58.5 176 31.8
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 1.1e-06 57.8 152 33.6
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 1.1e-06 57.8 212 30.2
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.1e-06 57.8 176 34.1
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 1.9e-06 57.0 218 32.1
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 1.9e-06 57.0 219 33.8
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 2.5e-06 56.6 225 29.8
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 2.5e-06 56.6 223 29.1
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 3.2e-06 56.2 261 27.6
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 3.2e-06 56.2 184 32.1
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 3.2e-06 56.2 223 31.4
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 5.5e-06 55.5 255 27.1
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 7.1e-06 55.1 148 31.1
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 9.3e-06 54.7 214 31.3
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 9.3e-06 54.7 214 31.3
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 9.3e-06 54.7 201 28.4
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 9.3e-06 54.7 206 28.6


User provided reference genes

Program Settings