Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p13670 Brassica napus HOM05D001122 ORTHO05D001877 7.0e-136 487.6 317 100.0
C04p26740 Brassica napus HOM05D001122 ORTHO05D001877 3.6e-124 448.7 320 85.6
C04p27770 Brassica napus HOM05D001122 ORTHO05D001877 7.8e-119 431.0 306 89.2
BolC4t24129H Brassica oleracea HOM05D001122 ORTHO05D001877 7.3e-93 344.7 251 86.9
BcaC02g10693 Brassica carinata HOM05D001122 ORTHO05D001877 1.6e-87 327.0 242 86.4
BolC4t24320H Brassica oleracea HOM05D001122 ORTHO05D001877 1.1e-83 314.3 246 85.8
C08p26890 Brassica napus HOM05D001122 ORTHO05D001877 1.1e-80 304.3 248 74.6
BolC8t50306H Brassica oleracea HOM05D001122 ORTHO05D001877 1.1e-80 304.3 248 74.2
BraA09t39946Z Brassica rapa HOM05D001122 ORTHO05D001877 2.7e-79 299.7 249 75.1
A09p44840 Brassica napus HOM05D001122 ORTHO05D001877 6.0e-79 298.5 249 74.7
BcaB01g00491 Brassica carinata HOM05D001122 ORTHO05D001877 6.7e-78 295.0 248 73.0
BcaB01g00426 Brassica carinata HOM05D001122 ORTHO05D001877 1.7e-73 280.4 248 70.6
Thhalv10010401m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 6.9e-67 258.5 258 62.8
Carub.0005s1806 Capsella rubella HOM05D001122 ORTHO05D001877 8.5e-57 224.9 254 58.7
AL5G32170 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 1.4e-56 224.2 255 68.2
AT3G51720 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 4.6e-55 219.2 255 61.6
A02p18690 Brassica napus HOM05D001122 ORTHO05D001877 2.3e-54 216.9 175 74.9
C01p35710 Brassica napus HOM05D001122 ORTHO05D001877 2.3e-54 216.9 175 74.9
BraA02t06911Z Brassica rapa HOM05D001122 ORTHO05D001877 2.3e-54 216.9 175 74.9
A09p55280 Brassica napus HOM05D001122 ORTHO05D001877 1.5e-50 204.1 175 70.9
CARHR161330 Cardamine hirsuta HOM05D001122 ORTHO05D001877 2.0e-50 203.8 254 56.7
BcaB01g00493 Brassica carinata HOM05D001122 ORTHO05D001877 4.4e-45 186.0 153 74.5
A02p14660 Brassica napus HOM05D001122 ORTHO05D001877 1.4e-38 164.5 109 98.2
Sp5g10560 Schrenkiella parvula HOM05D001122 ORTHO05D001877 3.5e-34 149.8 248 47.2
A03p21230 Brassica napus HOM05D001122 ORTHO05D001877 6.1e-31 139.0 270 40.4
BraA03t11360Z Brassica rapa HOM05D001122 ORTHO05D001877 6.1e-31 139.0 270 40.4
BcaC07g37682 Brassica carinata HOM05D001122 ORTHO05D001877 1.3e-28 131.3 164 56.1
BolC8t48053H Brassica oleracea HOM05D001122 ORTHO05D001877 1.6e-26 124.4 92 83.7
BolC3t14902H Brassica oleracea HOM05D001122 ORTHO05D001877 2.3e-25 120.6 286 39.2
BcaC01g05545 Brassica carinata HOM05D001122 ORTHO05D001877 5.0e-25 119.4 286 38.8
C03p25110 Brassica napus HOM05D001122 ORTHO05D001877 1.1e-24 118.2 286 38.8
BcaB01g00492 Brassica carinata HOM05D001122 ORTHO05D001877 4.2e-24 116.3 67 89.6
Sp4g20690 Schrenkiella parvula HOM05D001122 ORTHO05D001877 2.3e-22 110.5 320 33.8
Aa31LG5G24080 Aethionema arabicum HOM05D001122 ORTHO05D001877 2.6e-21 107.1 314 31.5
BcaC02g07470 Brassica carinata HOM05D001122 ORTHO05D001877 4.4e-21 106.3 304 34.2
C04p66660 Brassica napus HOM05D001122 ORTHO05D001877 4.4e-21 106.3 304 34.2
BolC4t28168H Brassica oleracea HOM05D001122 ORTHO05D001877 4.4e-21 106.3 304 34.2
TWI77G0311 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 5.7e-21 105.9 309 31.7
AT2G38370 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 6.3e-20 102.4 316 32.9
BcaB01g03695 Brassica carinata HOM05D001122 ORTHO05D001877 6.3e-20 102.4 257 37.0
Manes.09G115600 Manihot esculenta HOM05D001122 ORTHO05D001877 5.4e-19 99.4 320 30.6
BolC4t24130H Brassica oleracea HOM05D001122 ORTHO05D021939 2.0e-18 97.4 52 92.3
CANSAT35G1567 Cannabis sativa HOM05D001122 ORTHO05D001877 3.5e-18 96.7 333 30.6
Atru.chr8.2373 Acer truncatum HOM05D001122 ORTHO05D001877 5.9e-18 95.9 318 29.9
Aa31sc463G20 Aethionema arabicum HOM05D001122 ORTHO05D001877 1.3e-17 94.7 273 36.3
BcaB01g03692 Brassica carinata HOM05D001122 ORTHO05D001877 1.7e-17 94.4 286 33.9
Lsat_1_v5_gn_5_148221 Lactuca sativa HOM05D001122 ORTHO05D001877 3.8e-17 93.2 294 31.3
MD12G1184800 Malus domestica HOM05D001122 ORTHO05D001877 3.8e-17 93.2 330 30.0
Thhalv10016492m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 8.6e-17 92.0 318 35.8
Carub.0004s2034 Capsella rubella HOM05D001122 ORTHO05D001877 1.1e-16 91.7 321 33.0
C09p19750 Brassica napus HOM05D001122 ORTHO05D001877 3.3e-16 90.1 97 59.8
BolC9t54877H Brassica oleracea HOM05D001122 ORTHO05D001877 3.3e-16 90.1 97 59.8
BcaC04g22401 Brassica carinata HOM05D001122 ORTHO05D001877 4.3e-16 89.7 97 58.8
ECA248G3012 Erigeron canadensis HOM05D001122 ORTHO05D001877 7.3e-16 89.0 291 30.6
THA.LOC104806079 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 1.6e-15 87.8 337 29.4
Actinidia11525 Actinidia chinensis HOM05D001122 ORTHO05D001877 2.1e-15 87.4 314 30.6
A04p29360 Brassica napus HOM05D001122 ORTHO05D001877 2.1e-15 87.4 320 30.9
C01p21720 Brassica napus HOM05D001122 ORTHO05D021939 2.1e-15 87.4 52 86.5
BolC1t02088H Brassica oleracea HOM05D001122 ORTHO05D021939 2.1e-15 87.4 52 86.5
TWI74G1328 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 2.8e-15 87.0 321 29.6
A08p02770 Brassica napus HOM05D001122 ORTHO05D021939 3.6e-15 86.7 52 82.7
BraA04t16093Z Brassica rapa HOM05D001122 ORTHO05D021939 3.6e-15 86.7 52 82.7
Duzib151G1105 Durio zibethinus HOM05D001122 ORTHO05D001877 3.6e-15 86.7 321 28.0
Nn2g11099 Nelumbo nucifera HOM05D001122 ORTHO05D001877 4.7e-15 86.3 324 28.4
Migut.J00063 Erythranthe guttata HOM05D001122 ORTHO05D001877 6.1e-15 85.9 313 28.4
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 8.0e-15 85.5 328 32.3
HanXRQChr10g0298251 Helianthus annuus HOM05D001122 ORTHO05D001877 8.0e-15 85.5 310 29.7
Rhsim05G0228900 Rhododendron simsii HOM05D001122 ORTHO05D001877 1.4e-14 84.7 313 30.0
Cpa.g.sc86.25 Carica papaya HOM05D001122 ORTHO05D001877 3.0e-14 83.6 373 29.0
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 4.0e-14 83.2 333 28.8
COL.COLO4_30003 Corchorus olitorius HOM05D001122 ORTHO05D001877 5.2e-14 82.8 321 27.7
HanXRQChr01g0000001 Helianthus annuus HOM05D001122 ORTHO05D001877 5.2e-14 82.8 292 30.5
Glyma.01G131300 Glycine max HOM05D001122 ORTHO05D001877 6.8e-14 82.4 315 28.3
Sp7g08830 Schrenkiella parvula HOM05D001122 ORTHO05D001877 6.8e-14 82.4 101 52.5
CiPaw.10G163900 Carya illinoinensis HOM05D001122 ORTHO05D001877 2.6e-13 80.5 321 31.2
BraA04t18404Z Brassica rapa HOM05D001122 ORTHO05D001877 3.4e-13 80.1 305 30.5
Duzib212G0698 Durio zibethinus HOM05D001122 ORTHO05D001877 4.4e-13 79.7 321 27.4
FAN09G1334 Fragaria x ananassa HOM05D001122 ORTHO05D001877 4.4e-13 79.7 325 29.8
Prupe.6G289900 Prunus persica HOM05D001122 ORTHO05D001877 4.4e-13 79.7 329 28.6
EL10Ac7g17055 Beta vulgaris HOM05D001122 ORTHO05D001877 5.7e-13 79.3 348 26.7
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 5.7e-13 79.3 257 39.3
CAN.G15.26 Capsicum annuum HOM05D001122 ORTHO05D001877 7.5e-13 79.0 320 28.4
CSS0040395 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 9.8e-13 78.6 322 28.6
CSS0044199 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 9.8e-13 78.6 322 28.6
Actinidia29048 Actinidia chinensis HOM05D001122 ORTHO05D001877 1.3e-12 78.2 307 29.6
Ah.15g090230 Amaranthus hybridus HOM05D001122 ORTHO05D001877 2.2e-12 77.4 314 34.4
PGR031G0394 Punica granatum HOM05D001122 ORTHO05D001877 3.7e-12 76.6 318 27.4
Solyc09g042710.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 4.9e-12 76.3 321 29.6
BcaB08g35450 Brassica carinata HOM05D001122 ORTHO05D021939 6.4e-12 75.9 42 90.5
Oeu060448.2 Olea europaea HOM05D001122 ORTHO05D001877 8.3e-12 75.5 270 30.0
TAR636G1426 Trochodendron aralioides HOM05D001122 ORTHO05D001877 8.3e-12 75.5 324 27.8
Nitab4.5_0000126g0030 Nicotiana tabacum HOM05D001122 ORTHO05D001877 1.1e-11 75.1 315 28.3
Sopen09g015510 Solanum pennellii HOM05D001122 ORTHO05D001877 1.1e-11 75.1 321 29.6
FAN05G1096 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.4e-11 74.7 331 28.7
TAR629G1123 Trochodendron aralioides HOM05D001122 ORTHO05D001877 1.8e-11 74.3 324 27.5
CSS0030369 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 3.2e-11 73.6 315 27.9
MBI15_g27352_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D001877 3.2e-11 73.6 228 32.5
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 4.1e-11 73.2 321 29.6
AL4G35590 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 5.4e-11 72.8 229 35.8
ClCG04G006480 Citrullus lanatus HOM05D001122 ORTHO05D001877 5.4e-11 72.8 324 27.5
Glyma.03G037500 Glycine max HOM05D001122 ORTHO05D001877 5.4e-11 72.8 316 26.6
Oeu026964.1 Olea europaea HOM05D001122 ORTHO05D001877 5.4e-11 72.8 276 28.6
FAN02G1434 Fragaria x ananassa HOM05D001122 ORTHO05D001877 7.0e-11 72.4 325 29.8
Lj3g0016412 Lotus japonicus HOM05D001122 ORTHO05D001877 1.6e-10 71.2 366 26.5
Haze_21139 Corylus avellana HOM05D001122 ORTHO05D001877 2.0e-10 70.9 321 30.2
Haze_21145 Corylus avellana HOM05D001122 ORTHO05D001877 2.0e-10 70.9 321 30.2
AL4G35550 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 2.7e-10 70.5 132 37.9
BcaC02g07472 Brassica carinata HOM05D001122 ORTHO05D001877 2.7e-10 70.5 146 40.4
Medtr7g072550 Medicago truncatula HOM05D001122 ORTHO05D001877 5.9e-10 69.3 327 27.2
MD04G1171400 Malus domestica HOM05D001122 ORTHO05D001877 7.8e-10 68.9 329 28.6
Sed0001794 Sechium edule HOM05D001122 ORTHO05D001877 7.8e-10 68.9 319 26.3
QL07p032789 Quercus lobata HOM05D001122 ORTHO05D001877 1.0e-09 68.6 321 29.3
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 1.3e-09 68.2 319 27.3
Psat3g121320 Pisum sativum HOM05D001122 ORTHO05D001877 3.0e-09 67.0 363 24.8
Phvul.010G067400 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 3.9e-09 66.6 330 25.8
Aqoxy2G00742 Aquilegia oxysepala HOM05D001122 ORTHO05D001877 5.0e-09 66.2 324 25.9
FAN14G3888 Fragaria x ananassa HOM05D001122 ORTHO05D001877 5.0e-09 66.2 331 30.5
MELO3C026053.2 Cucumis melo HOM05D001122 ORTHO05D001877 6.6e-09 65.9 324 26.2
DCAR_028909 Daucus carota HOM05D001122 ORTHO05D001877 6.6e-09 65.9 319 27.0
FvH4_6g10230 Fragaria vesca HOM05D001122 ORTHO05D001877 8.6e-09 65.5 325 31.1
VMungo0331G1084 Vigna mungo HOM05D001122 ORTHO05D001877 1.1e-08 65.1 225 28.4
CsaV3_4G027040 Cucumis sativus L. HOM05D001122 ORTHO05D001877 1.5e-08 64.7 324 25.6
CsaV3_UNG107770 Cucumis sativus L. HOM05D001122 ORTHO05D001877 1.5e-08 64.7 324 25.6
Thecc.04G155100 Theobroma cacao HOM05D001122 ORTHO05D001877 1.9e-08 64.3 321 27.7
Lj3C942G13 Lonicera japonica HOM05D001122 ORTHO05D000051 3.3e-08 63.5 321 31.5
VMungo1383G2320 Vigna mungo HOM05D001122 ORTHO05D001877 3.3e-08 63.5 220 30.5
AUR62029682 Chenopodium quinoa HOM05D001122 ORTHO05D001877 4.3e-08 63.2 317 33.8
PGSC0003DMG400029079 Solanum tuberosum HOM05D001122 ORTHO05D001877 4.3e-08 63.2 294 26.2
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 4.3e-08 63.2 319 33.9
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 4.3e-08 63.2 319 33.9
vmacro20355 Vaccinium macrocarpon HOM05D001122 ORTHO05D001877 4.3e-08 63.2 313 34.8
CAN.G111.30 Capsicum annuum HOM05D001122 ORTHO05D001877 7.3e-08 62.4 301 28.6
Sc02g0000820 Simmondsia chinensis HOM05D001122 ORTHO05D001877 7.3e-08 62.4 313 26.2
Nitab4.5_0000263g0240 Nicotiana tabacum HOM05D001122 ORTHO05D001877 9.5e-08 62.0 309 25.6
FAN05G3468 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.2e-07 61.6 327 28.7
Hund03744 Selenicereus undatus HOM05D001122 ORTHO05D001877 1.2e-07 61.6 322 24.8
Solyc06g050350.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 1.2e-07 61.6 299 25.8
Sopen06g015840 Solanum pennellii HOM05D001122 ORTHO05D001877 1.2e-07 61.6 299 25.8
arahy.Tifrunner.gnm1.ann1.5K0G3N Arachis hypogaea HOM05D001122 ORTHO05D001877 1.6e-07 61.2 320 25.9
arahy.Tifrunner.gnm1.ann1.MH7SIY Arachis hypogaea HOM05D001122 ORTHO05D001877 1.6e-07 61.2 320 25.9
AUR62006350 Chenopodium quinoa HOM05D001122 ORTHO05D001877 1.6e-07 61.2 189 33.9
Dinv11391 Davidia involucrata HOM05D001122 ORTHO05D001877 1.6e-07 61.2 320 27.5
Lj1A965T41 Lonicera japonica HOM05D001122 ORTHO05D001877 1.6e-07 61.2 265 30.2
Potri.016G133300 Populus trichocarpa HOM05D001122 ORTHO05D001877 1.6e-07 61.2 321 28.0
Lj1g0026787 Lotus japonicus HOM05D001122 ORTHO05D001877 2.1e-07 60.8 369 25.5
Oeu064876.1 Olea europaea HOM05D001122 ORTHO05D001877 2.1e-07 60.8 212 28.8
A03p22780 Brassica napus HOM05D001122 ORTHO05D001877 2.8e-07 60.5 185 30.3
CARHR135600 Cardamine hirsuta HOM05D001122 ORTHO05D001877 3.6e-07 60.1 190 30.0
THA.LOC104806629 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 3.6e-07 60.1 59 61.0
TPR.G5005 Trifolium pratense HOM05D001122 ORTHO05D001877 6.2e-07 59.3 318 25.5
Nitab4.5_0002713g0010 Nicotiana tabacum HOM05D001122 ORTHO05D001877 8.0e-07 58.9 306 25.2
Sc10g0002870 Simmondsia chinensis HOM05D001122 ORTHO05D001877 8.0e-07 58.9 270 28.9
Migut.F01261 Erythranthe guttata HOM05D001122 ORTHO05D001877 1.1e-06 58.5 121 36.4
Hma1.2p1_1052F.1_g252360 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 1.1e-06 58.5 332 24.4
Hund13475 Selenicereus undatus HOM05D001122 ORTHO05D001877 1.1e-06 58.5 301 26.6
Cc06_g00550 Coffea canephora HOM05D001122 ORTHO05D001877 1.4e-06 58.2 199 29.6
Hma1.2p1_1240F.1_g269540 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 1.4e-06 58.2 124 36.3
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.8e-06 57.8 144 37.5
Lsat_1_v5_gn_9_59180 Lactuca sativa HOM05D001122 ORTHO05D001877 1.8e-06 57.8 256 30.5
Peaxi162Scf00464g00002 Petunia axillaris HOM05D001122 ORTHO05D001877 1.8e-06 57.8 316 25.0
Phvul.008G086500 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 1.8e-06 57.8 216 30.1
BraA03t11502Z Brassica rapa HOM05D001122 ORTHO05D001877 2.3e-06 57.4 187 28.9
Dinv25307 Davidia involucrata HOM05D001122 ORTHO05D001877 3.1e-06 57.0 324 23.5
TPR.G4407 Trifolium pratense HOM05D001122 ORTHO05D001877 4.0e-06 56.6 317 25.2
Cpa.g.sc19.90 Carica papaya HOM05D001122 ORTHO05D001877 5.2e-06 56.2 182 29.7
Psat7g230000 Pisum sativum HOM05D001122 ORTHO05D001877 5.2e-06 56.2 338 25.4
EL10Ac2g04266 Beta vulgaris HOM05D001122 ORTHO05D001877 8.9e-06 55.5 250 25.6
C03p27020 Brassica napus HOM05D001122 ORTHO05D001877 8.9e-06 55.5 185 29.2
Ca_07747_v3 Cicer arietinum L. HOM05D001122 ORTHO05D001877 8.9e-06 55.5 279 26.2
Hma1.2p1_0588F.1_g184575 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 8.9e-06 55.5 321 25.9
RcHm_v2.0_Chr3g0460971 Rosa chinensis HOM05D001122 ORTHO05D001877 8.9e-06 55.5 333 30.6


User provided reference genes

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