Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 8.8e-132 473.8 267 100.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 8.8e-132 473.8 267 100.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 4.8e-130 468.0 267 98.9
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 4.7e-125 451.4 271 95.6
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 6.6e-111 404.4 235 99.1
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.0e-103 380.6 235 91.5
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.1e-87 325.1 245 82.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.5e-78 296.2 247 72.1
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 5.6e-70 268.5 248 68.1
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 4.9e-66 255.4 262 64.5
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.4e-65 253.8 273 64.8
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.7e-63 245.0 252 64.3
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.5e-62 243.8 274 60.6
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 5.6e-62 241.9 253 62.8
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.1e-61 240.0 252 61.1
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.1e-56 223.4 254 58.7
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.3e-55 219.9 268 57.1
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 9.6e-54 214.5 268 53.4
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 9.7e-46 188.0 257 51.4
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.2e-43 181.0 259 51.4
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.4e-41 174.1 259 51.0
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-41 173.7 267 48.7
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 3.2e-41 172.9 257 50.6
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 2.1e-40 170.2 259 47.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.7e-40 169.9 253 50.2
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 1.8e-39 167.2 250 48.4
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 2.3e-39 166.8 258 50.4
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 6.7e-39 165.2 262 47.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 3.7e-37 159.5 252 47.6
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 6.9e-36 155.2 259 49.0
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.8e-34 149.4 226 50.0
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.5e-30 137.5 258 45.3
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 9.7e-30 134.8 250 42.0
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.3e-29 134.4 250 42.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.8e-29 132.5 250 44.8
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 6.3e-29 132.1 256 41.4
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.1e-28 131.3 261 41.0
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.8e-28 130.6 251 40.6
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.1e-28 129.4 251 41.0
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.6e-27 127.5 237 43.5
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-27 126.3 244 44.3
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-27 126.3 254 42.1
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 4.5e-27 125.9 270 41.1
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 7.7e-27 125.2 243 43.6
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.7e-26 124.0 251 40.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 3.8e-26 122.9 253 41.9
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 5.0e-26 122.5 239 43.9
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 6.5e-26 122.1 263 40.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 6.5e-26 122.1 240 44.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 8.5e-26 121.7 249 41.4
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.5e-25 120.2 253 41.5
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 4.2e-25 119.4 250 40.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 5.5e-25 119.0 258 39.1
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 5.5e-25 119.0 242 40.1
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 7.2e-25 118.6 242 43.0
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 9.4e-25 118.2 241 40.2
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.4e-25 118.2 243 41.2
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 9.4e-25 118.2 242 40.1
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.2e-24 117.9 248 40.7
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.7e-24 116.7 236 42.4
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 3.6e-24 116.3 244 39.3
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 3.6e-24 116.3 234 40.2
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 6.1e-24 115.5 241 40.7
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.4e-23 114.4 254 40.2
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.3e-23 113.6 212 42.9
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.0e-23 113.2 255 40.8
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.0e-23 112.8 243 41.6
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.1e-22 111.3 239 38.5
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.5e-22 110.9 251 38.6
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.0e-22 110.5 229 41.9
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 3.3e-22 109.8 241 38.2
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.3e-22 109.8 235 39.1
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 4.4e-22 109.4 235 42.6
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-21 107.5 246 39.4
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 4.8e-21 105.9 232 39.2
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.8e-21 105.9 228 40.8
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 4.8e-21 105.9 247 39.3
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 8.2e-21 105.1 231 39.0
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.4e-20 104.4 232 39.7
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 1.4e-20 104.4 245 38.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 2.4e-20 103.6 214 42.5
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 7.0e-20 102.1 216 41.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 9.1e-20 101.7 226 38.5
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.1e-20 101.7 231 38.5
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-19 100.9 240 38.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 2.0e-19 100.5 205 39.0
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-19 100.1 231 38.1
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.7e-19 100.1 228 39.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.5e-19 99.8 284 35.6
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 3.5e-19 99.8 247 36.4
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.5e-19 99.4 246 37.4
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.3e-18 97.8 248 35.9
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.3e-18 97.8 248 35.9
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 2.2e-18 97.1 241 41.1
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 2.9e-18 96.7 262 35.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.8e-18 96.3 243 37.4
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 3.8e-18 96.3 230 39.1
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.5e-17 94.4 211 39.3
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.5e-17 93.6 239 36.4
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.2e-16 91.3 222 36.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.7e-16 90.1 234 38.5
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 6.1e-16 89.0 250 34.8
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 6.1e-16 89.0 200 38.5
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.0e-15 88.2 243 36.2
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.8e-15 87.4 213 37.6
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 3.0e-15 86.7 215 41.4
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.0e-15 86.7 244 36.5
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.0e-15 86.7 238 36.1
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.2e-14 84.7 207 37.7
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.4e-14 83.2 243 39.5
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.4e-14 82.8 215 37.2
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 8.3e-13 78.6 264 30.7
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.1e-12 78.2 207 33.8
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.4e-12 77.0 210 40.0
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.1e-12 76.3 203 36.0
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.1e-12 75.1 196 37.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.1e-12 75.1 153 38.6
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.6e-11 74.3 128 49.2
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.6e-11 74.3 253 34.0
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.0e-11 73.9 201 36.8
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 3.5e-11 73.2 243 32.9
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.2e-10 70.5 196 36.2
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.9e-10 70.1 121 40.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 5.0e-10 69.3 302 27.5
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.1e-09 68.2 127 40.2
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.1e-09 68.2 218 33.0
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.2e-09 66.6 154 39.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 4.2e-09 66.2 206 32.5
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.2e-09 65.5 143 39.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 7.2e-09 65.5 201 35.8
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.4e-09 65.1 315 27.0
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.1e-08 63.9 172 34.9
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.1e-08 63.9 268 31.7
A01p38570 Brassica napus HOM05D061175 ORTHO05D005518 4.7e-08 62.8 49 73.5
A01p38790 Brassica napus HOM05D061175 ORTHO05D005518 4.7e-08 62.8 49 73.5
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 6.1e-08 62.4 238 31.1
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.0e-07 61.6 183 35.0
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 3.0e-07 60.1 202 30.2
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.8e-07 58.5 197 35.0
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 2.6e-06 57.0 169 32.5
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.4e-06 56.6 169 32.0


User provided reference genes

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