Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 6.4e-60 233.8 112 100.0
C02p64490 Brassica napus HOM05D023372 ORTHO05D024533 9.1e-30 133.7 91 76.9
BolC4t27215H Brassica oleracea HOM05D023372 ORTHO05D024533 9.1e-30 133.7 91 76.9
C07p12590 Brassica napus HOM05D023372 ORTHO05D024533 1.3e-28 129.8 91 75.8
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.3e-07 60.1 38 78.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.7e-07 59.7 38 76.3
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-07 59.7 36 83.3
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.7e-07 59.7 38 76.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.2e-07 59.3 38 76.3
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 2.8e-07 58.9 38 76.3
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 76.3
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 73.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 73.7
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 73.7
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 76.3
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 73.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 73.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 3.7e-07 58.5 38 73.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 4.8e-07 58.2 38 73.7
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.8e-07 58.2 38 73.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 76.3
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 6.3e-07 57.8 38 73.7
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.3e-07 57.4 38 73.7
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 71.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-06 57.0 45 64.4
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 71.1
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 71.1
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.1e-06 57.0 38 73.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.4e-06 56.6 38 71.1
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.4e-06 56.6 38 71.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.4e-06 56.6 38 71.1
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.4e-06 56.6 38 73.7
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 71.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 71.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 71.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 68.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 71.1
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 73.7
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.8e-06 56.2 38 68.4
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.4e-06 55.8 38 71.1
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-06 55.8 38 71.1
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.1e-06 55.5 38 68.4
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.1e-06 55.5 38 68.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.1e-06 55.5 38 68.4
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.1e-06 55.5 38 71.1
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 3.1e-06 55.5 38 73.7
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 68.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 68.4
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 68.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 71.1
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 71.1
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 71.1
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.1e-06 55.1 38 71.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 4.1e-06 55.1 37 67.6
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 7.0e-06 54.3 108 38.9


User provided reference genes

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