Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 2.3e-104 382.5 229 100.0
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 2.8e-102 375.6 229 98.3
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.8e-96 356.3 232 93.5
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.8e-96 356.3 232 93.5
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 2.3e-88 329.3 180 93.3
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.8e-85 319.7 180 90.6
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 5.5e-82 308.1 232 84.9
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.6e-73 280.0 234 79.9
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 6.3e-70 268.1 238 74.4
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 6.8e-64 248.1 236 66.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 7.5e-63 244.6 226 61.9
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 5.3e-61 238.4 233 71.7
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.7e-46 190.3 194 56.7
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 4.0e-40 169.1 247 54.3
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.7e-38 163.7 255 52.9
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.2e-38 163.3 280 43.2
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 3.2e-37 159.5 269 50.2
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 3.5e-36 156.0 194 51.5
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 7.8e-36 154.8 194 51.5
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 7.8e-36 154.8 194 51.5
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.7e-35 153.7 194 51.0
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 1.7e-35 153.7 237 55.3
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 5.0e-35 152.1 194 51.0
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.1e-34 151.0 281 52.3
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.2e-33 147.5 260 42.7
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 3.4e-31 139.4 261 47.5
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 6.6e-27 125.2 256 43.0
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 8.6e-27 124.8 220 50.9
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 5.2e-16 89.0 160 45.6
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 2.2e-14 83.6 124 46.0
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 5.4e-13 79.0 154 37.0
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 2.7e-12 76.6 153 39.9
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 6.0e-12 75.5 187 36.4
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.0e-11 74.7 163 36.8
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 1.0e-11 74.7 154 36.4
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.7e-11 73.9 172 37.2
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.3e-11 73.6 168 33.3
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 2.3e-11 73.6 158 41.1
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 3.0e-11 73.2 162 38.9
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.0e-11 73.2 93 50.5
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 3.9e-11 72.8 183 38.3
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 3.9e-11 72.8 94 46.8
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 3.9e-11 72.8 162 40.7
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 5.1e-11 72.4 162 40.1
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 8.7e-11 71.6 96 45.8
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 1.5e-10 70.9 186 37.6
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.9e-10 70.5 166 35.5
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.5e-10 70.1 156 39.7
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 3.3e-10 69.7 173 37.0
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 5.6e-10 68.9 101 43.6
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 7.3e-10 68.6 174 37.9
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 9.6e-10 68.2 153 35.9
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 9.6e-10 68.2 154 35.1
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 9.6e-10 68.2 96 44.8
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 9.6e-10 68.2 94 44.7
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 1.3e-09 67.8 156 37.2
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.3e-09 67.8 93 48.4
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.6e-09 67.4 167 33.5
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 2.1e-09 67.0 94 47.9
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 2.8e-09 66.6 94 46.8
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.8e-09 66.6 120 40.0
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 6.2e-09 65.5 173 33.5
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 8.1e-09 65.1 168 36.3
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.8e-08 63.9 163 34.4
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 1.8e-08 63.9 156 33.3
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.4e-08 63.5 163 36.2
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 2.4e-08 63.5 142 37.3
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 3.1e-08 63.2 180 35.0
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.0e-08 62.8 152 36.2
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.0e-08 62.8 155 34.2
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 5.3e-08 62.4 93 45.2
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 6.9e-08 62.0 163 35.6
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 6.9e-08 62.0 130 40.0
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 9.0e-08 61.6 99 41.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 1.2e-07 61.2 92 45.7
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.5e-07 60.8 92 41.3
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.0e-07 60.5 93 43.0
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 2.0e-07 60.5 103 40.8
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.0e-07 60.5 156 35.9
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 3.4e-07 59.7 99 41.4
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 4.4e-07 59.3 151 33.1
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 5.8e-07 58.9 155 33.5
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 5.8e-07 58.9 94 40.4
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 5.8e-07 58.9 87 47.1
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.3e-06 57.8 99 39.4
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 1.3e-06 57.8 133 33.8
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.7e-06 57.4 133 36.8
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 1.7e-06 57.4 108 35.2
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 2.2e-06 57.0 141 33.3
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.2e-06 57.0 166 31.3
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 2.9e-06 56.6 93 39.8
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 3.8e-06 56.2 92 44.6


User provided reference genes

Program Settings