Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1774.6 866 100.0
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1769.6 866 99.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1711.4 866 96.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1710.3 866 96.7
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1709.9 866 96.7
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1660.2 866 93.8
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1594.7 862 89.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1565.1 869 87.0
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1492.6 863 83.9
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1492.2 863 83.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1486.9 862 83.5
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1431.8 863 79.6
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1428.3 862 81.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 863 71.8
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1272.3 869 70.3
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1271.1 864 69.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 864 70.3
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 864 70.1
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 874 69.7
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 868 70.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 864 70.1
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1255.0 864 69.9
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 864 69.7
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1237.6 868 68.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 873 67.9
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 868 68.0
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1234.6 870 68.7
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 879 67.3
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 867 67.5
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 690 85.5
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 872 67.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 865 68.2
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 870 67.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 863 67.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 865 68.1
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 873 67.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 866 68.0
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1219.9 873 67.7
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 866 68.7
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 870 68.0
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 864 67.7
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 863 67.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 864 68.5
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 867 67.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 868 67.4
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 870 66.8
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 871 66.8
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 865 67.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 864 67.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 865 67.5
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 870 67.5
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 867 66.9
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 876 66.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1199.1 871 65.8
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 871 66.4
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1195.3 869 66.5
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1194.9 863 65.7
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 877 66.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 869 67.0
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 864 66.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 869 66.3
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 891 65.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 863 66.3
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1188.3 859 65.9
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 864 66.8
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1187.6 863 67.1
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 866 66.5
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1181.8 872 67.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 858 65.6
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1179.9 864 66.3
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1179.9 866 65.5
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1177.5 863 66.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1176.8 864 66.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1175.6 872 65.6
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1174.8 876 64.5
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 868 65.3
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1171.4 882 64.4
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1169.5 875 65.0
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1168.7 863 65.6
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1167.5 864 66.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1164.8 878 63.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1160.6 866 64.7
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1159.8 865 64.6
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1159.8 866 64.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1152.5 863 64.2
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 867 64.0
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1148.3 865 63.0
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1120.1 864 63.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1114.8 868 62.3
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1095.5 825 65.0
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1077.0 847 63.2
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 2.3e-306 1055.4 745 69.0
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 5.5e-300 1034.2 646 74.6
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.4e-298 1029.6 862 57.3
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 2.0e-297 1025.8 691 69.8
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 2.4e-295 1018.8 865 59.7
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 7.2e-292 1007.3 859 57.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.6e-286 989.6 862 55.1
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 7.7e-278 960.7 861 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.5e-276 956.4 870 53.8
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 5.9e-270 934.5 874 52.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.5e-204 717.2 760 48.2
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-156 558.1 388 68.0
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 9.5e-151 538.5 475 56.6
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.3e-136 490.7 460 55.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.2e-115 421.0 365 59.2
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 5.5e-82 310.1 307 55.4
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.8e-62 244.6 168 68.5
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 4.1e-61 240.7 204 57.4
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 8.8e-48 196.4 161 60.9
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 6.8e-40 170.2 198 47.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.6e-36 159.1 170 47.6
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.8e-32 145.6 103 64.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-31 142.1 149 49.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-25 122.9 85 68.2
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 69 72.5
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.9e-22 111.7 119 51.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 4.9e-22 110.9 86 64.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.2e-20 106.3 90 60.0
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.9e-18 99.0 86 55.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.6e-15 88.6 107 45.8
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.7e-14 85.9 322 26.4
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.1e-13 83.2 319 25.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.7e-12 78.6 274 25.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 3.5e-12 78.2 278 24.8
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.0e-11 76.6 311 25.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.0e-11 76.6 251 24.7
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.9e-11 74.7 297 25.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 3.3e-10 71.6 65 56.9
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 4.3e-10 71.2 338 21.3
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.6e-09 68.2 333 23.4
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.2e-09 67.4 335 23.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.4e-08 66.2 308 22.1
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 298 23.5
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.3e-08 65.5 329 20.1
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.1e-08 65.1 303 24.8
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 4.0e-08 64.7 94 41.5
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 3.4e-07 61.6 288 23.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 3.4e-07 61.6 306 24.8
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.7e-06 59.3 32 78.1
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.7e-06 59.3 296 25.0
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.7e-06 59.3 220 25.0
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 8.3e-06 57.0 166 25.9
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 8.3e-06 57.0 200 26.0


User provided reference genes

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