Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10590 Brassica napus HOM05D003082 ORTHO05D003497 1.4e-63 246.1 126 100.0
BraA04t16722Z Brassica rapa HOM05D003082 ORTHO05D003497 1.5e-60 236.1 126 97.6
BcaC02g09568 Brassica carinata HOM05D003082 ORTHO05D003497 3.9e-45 184.9 109 90.8
C04p44240 Brassica napus HOM05D003082 ORTHO05D003497 3.9e-45 184.9 109 90.8
BcaB06g27069 Brassica carinata HOM05D003082 ORTHO05D003497 1.5e-44 183.0 108 93.5
BolC4t25997H Brassica oleracea HOM05D003082 ORTHO05D003497 7.3e-44 180.6 109 89.0
Sp7g04760 Schrenkiella parvula HOM05D003082 ORTHO05D003497 9.8e-41 170.2 116 84.5
AL7G46180 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 6.4e-32 141.0 112 75.0
BcaC02g08888 Brassica carinata HOM05D003082 ORTHO05D003497 8.4e-32 140.6 109 77.1
C04p49430 Brassica napus HOM05D003082 ORTHO05D003497 8.4e-32 140.6 109 77.1
BolC4t26528H Brassica oleracea HOM05D003082 ORTHO05D003497 8.4e-32 140.6 109 77.1
BcaB06g27692 Brassica carinata HOM05D003082 ORTHO05D003497 1.1e-31 140.2 114 73.7
AT5G37475 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 2.7e-30 135.6 112 71.4
Thhalv10027912m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 3.5e-30 135.2 112 71.4
CARHR215550 Cardamine hirsuta HOM05D003082 ORTHO05D003497 1.7e-29 132.9 110 71.8
BraA07t30937Z Brassica rapa HOM05D003082 ORTHO05D003497 3.0e-29 132.1 113 67.3
Sp5g21120 Schrenkiella parvula HOM05D003082 ORTHO05D003497 3.9e-29 131.7 110 71.8
A07p33090 Brassica napus HOM05D003082 ORTHO05D003497 5.1e-29 131.3 112 67.0
BolC6t39029H Brassica oleracea HOM05D003082 ORTHO05D003497 2.5e-28 129.0 115 67.8
THA.LOC104822082 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 4.7e-27 124.8 105 67.6
THA.LOC104823823 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 1.4e-26 123.2 108 66.7
A04p15210 Brassica napus HOM05D003082 ORTHO05D003497 8.9e-26 120.6 110 71.8
Gohir.D02G056500 Gossypium hirsutum HOM05D003082 ORTHO05D003497 8.9e-26 120.6 104 65.4
COL.COLO4_34689 Corchorus olitorius HOM05D003082 ORTHO05D003497 1.5e-25 119.8 103 63.1
Gorai.005G062400 Gossypium raimondii HOM05D003082 ORTHO05D003497 3.4e-25 118.6 104 64.4
AL2G23680 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 5.8e-25 117.9 108 63.0
Gohir.A02G051600 Gossypium hirsutum HOM05D003082 ORTHO05D003497 9.9e-25 117.1 104 64.4
Migut.H01515 Erythranthe guttata HOM05D003082 ORTHO05D003497 2.9e-24 115.5 109 62.4
Hma1.2p1_0127F.1_g059670 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 6.4e-24 114.4 124 57.3
BcaC03g14729 Brassica carinata HOM05D003082 ORTHO05D003497 1.4e-23 113.2 108 61.1
Lj3A832G16 Lonicera japonica HOM05D003082 ORTHO05D003497 1.4e-23 113.2 98 65.3
Glyma.16G215500 Glycine max HOM05D003082 ORTHO05D003497 1.9e-23 112.8 103 66.0
CiPaw.05G244300 Carya illinoinensis HOM05D003082 ORTHO05D003497 2.4e-23 112.5 108 61.1
Lalb_Chr22g0353931 Lupinus albus HOM05D003082 ORTHO05D003497 3.2e-23 112.1 107 66.4
QL01p029277 Quercus lobata HOM05D003082 ORTHO05D003497 3.2e-23 112.1 108 59.3
Aa31LG8G12150 Aethionema arabicum HOM05D003082 ORTHO05D003497 5.4e-23 111.3 114 62.3
C02p21740 Brassica napus HOM05D003082 ORTHO05D003497 5.4e-23 111.3 108 60.2
BolC2t08308H Brassica oleracea HOM05D003082 ORTHO05D003497 5.4e-23 111.3 108 60.2
Lalb_Chr14g0370291 Lupinus albus HOM05D003082 ORTHO05D003497 5.4e-23 111.3 103 66.0
A02p13440 Brassica napus HOM05D003082 ORTHO05D003497 9.3e-23 110.5 108 60.2
ClCG01G008760 Citrullus lanatus HOM05D003082 ORTHO05D003497 9.3e-23 110.5 108 61.1
BcaB03g15296 Brassica carinata HOM05D003082 ORTHO05D003497 1.2e-22 110.2 112 59.8
BraA02t06402Z Brassica rapa HOM05D003082 ORTHO05D003497 1.2e-22 110.2 108 62.0
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.6e-22 109.8 108 62.0
MELO3C025123.2 Cucumis melo HOM05D003082 ORTHO05D003497 1.6e-22 109.8 108 63.0
Hma1.2p1_0331F.1_g127550 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 1.6e-22 109.8 108 59.3
CiPaw.06G015400 Carya illinoinensis HOM05D003082 ORTHO05D003497 2.7e-22 109.0 108 60.2
ECA238G3678 Erigeron canadensis HOM05D003082 ORTHO05D003497 2.7e-22 109.0 107 60.7
C06p39360 Brassica napus HOM05D003082 ORTHO05D003497 3.5e-22 108.6 115 60.9
Potri.017G138300 Populus trichocarpa HOM05D003082 ORTHO05D003497 4.6e-22 108.2 124 53.2
BcaB05g24148 Brassica carinata HOM05D003082 ORTHO05D003497 7.8e-22 107.5 108 58.3
DCAR_019930 Daucus carota HOM05D003082 ORTHO05D003497 1.0e-21 107.1 109 59.6
Nitab4.5_0000190g0170 Nicotiana tabacum HOM05D003082 ORTHO05D003497 1.0e-21 107.1 111 59.5
Glyma.09G165600 Glycine max HOM05D003082 ORTHO05D003497 1.3e-21 106.7 103 63.1
Peaxi162Scf00588g01011 Petunia axillaris HOM05D003082 ORTHO05D003497 1.3e-21 106.7 109 61.5
Oeu053940.1 Olea europaea HOM05D003082 ORTHO05D003497 1.7e-21 106.3 108 59.3
CsaV3_5G024250 Cucumis sativus L. HOM05D003082 ORTHO05D003497 2.3e-21 105.9 94 66.0
Duzib052G0144 Durio zibethinus HOM05D003082 ORTHO05D003497 2.3e-21 105.9 103 58.3
BcaB05g24381 Brassica carinata HOM05D003082 ORTHO05D003497 3.0e-21 105.5 88 73.9
BcaC08g46082 Brassica carinata HOM05D003082 ORTHO05D003497 3.0e-21 105.5 115 58.3
Nitab4.5_0003574g0100 Nicotiana tabacum HOM05D003082 ORTHO05D003497 3.0e-21 105.5 109 59.6
BcaB03g15297 Brassica carinata HOM05D003082 ORTHO05D003497 3.9e-21 105.1 110 60.9
Sed0014317 Sechium edule HOM05D003082 ORTHO05D003497 3.9e-21 105.1 102 62.7
TWI74G0632 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 3.9e-21 105.1 109 58.7
Potri.004G082200 Populus trichocarpa HOM05D003082 ORTHO05D003497 5.1e-21 104.8 121 54.5
HanXRQChr14g0432091 Helianthus annuus HOM05D003082 ORTHO05D003497 8.7e-21 104.0 107 57.9
Carub.0002s1202 Capsella rubella HOM05D003082 ORTHO05D003497 1.1e-20 103.6 111 60.4
CANSAT01G2338 Cannabis sativa HOM05D003082 ORTHO05D003497 1.9e-20 102.8 125 52.8
Cc02_g12480 Coffea canephora HOM05D003082 ORTHO05D003497 2.5e-20 102.4 96 59.4
Actinidia01599 Actinidia chinensis HOM05D003082 ORTHO05D003497 4.3e-20 101.7 104 54.8
PGSC0003DMG400022359 Solanum tuberosum HOM05D003082 ORTHO05D003497 4.3e-20 101.7 109 57.8
Atru.chr1.1952 Acer truncatum HOM05D003082 ORTHO05D003497 5.6e-20 101.3 103 59.2
Carub.0007s3263 Capsella rubella HOM05D003082 ORTHO05D003497 5.6e-20 101.3 109 59.6
Peaxi162Scf00299g00531 Petunia axillaris HOM05D003082 ORTHO05D003497 5.6e-20 101.3 93 65.6
TAR622G0065 Trochodendron aralioides HOM05D003082 ORTHO05D003497 5.6e-20 101.3 105 55.2
MSTRG.13183 Avicennia marina HOM05D003082 ORTHO05D003497 7.3e-20 100.9 110 54.5
Dinv06240 Davidia involucrata HOM05D003082 ORTHO05D003497 7.3e-20 100.9 106 58.5
TWI60G0785 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 1.6e-19 99.8 108 56.5
Sc14g0006870 Simmondsia chinensis HOM05D003082 ORTHO05D003497 2.1e-19 99.4 111 52.3
Ciclev10002394m.g Citrus clementina HOM05D003082 ORTHO05D003497 4.8e-19 98.2 104 57.7
Gohir.A09G236200 Gossypium hirsutum HOM05D003082 ORTHO05D003497 4.8e-19 98.2 122 50.8
Migut.M01208 Erythranthe guttata HOM05D003082 ORTHO05D003497 8.1e-19 97.4 128 50.0
Phvul.004G141100 Phaseolus vulgaris HOM05D003082 ORTHO05D003497 1.1e-18 97.1 114 59.6
Ca_11830_v3 Cicer arietinum L. HOM05D003082 ORTHO05D003497 1.4e-18 96.7 128 50.0
RcHm_v2.0_Chr7g0211981 Rosa chinensis HOM05D003082 ORTHO05D003497 1.4e-18 96.7 95 57.9
TWI15G0329 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 1.8e-18 96.3 108 54.6
Manes.06G016100 Manihot esculenta HOM05D003082 ORTHO05D003497 4.0e-18 95.1 110 54.5
Nitab4.5_0003465g0050 Nicotiana tabacum HOM05D003082 ORTHO05D003497 4.0e-18 95.1 106 59.4
Haze_14301 Corylus avellana HOM05D003082 ORTHO05D003497 5.3e-18 94.7 106 53.8
Prupe.5G027300 Prunus persica HOM05D003082 ORTHO05D003497 6.9e-18 94.4 88 63.6
QL07p034910 Quercus lobata HOM05D003082 ORTHO05D003497 6.9e-18 94.4 88 62.5
Aa31LG2G2810 Aethionema arabicum HOM05D000451 ORTHO05D000351 9.0e-18 94.0 110 53.6
MSTRG.7294 Avicennia marina HOM05D003082 ORTHO05D003497 9.0e-18 94.0 101 55.4
BcaC08g46081 Brassica carinata HOM05D003082 ORTHO05D003497 9.0e-18 94.0 114 55.3
Oeu043695.1 Olea europaea HOM05D003082 ORTHO05D003497 9.0e-18 94.0 102 53.9
Lj2g0006781 Lotus japonicus HOM05D003082 ORTHO05D003497 1.2e-17 93.6 106 60.4
Sed0024856 Sechium edule HOM05D003082 ORTHO05D003497 1.2e-17 93.6 102 56.9
Aqoxy5G04053 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 1.5e-17 93.2 103 55.3
Gohir.A10G167800 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.5e-17 93.2 106 49.1
QL02p059987 Quercus lobata HOM05D003082 ORTHO05D003497 1.5e-17 93.2 142 43.7
CSS0043531 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 2.6e-17 92.4 109 50.5
TAR371G0008 Trochodendron aralioides HOM05D003082 ORTHO05D003497 3.4e-17 92.0 111 50.5
TAR374G0282 Trochodendron aralioides HOM05D003082 ORTHO05D003497 4.4e-17 91.7 102 54.9
Duzib212G0528 Durio zibethinus HOM05D003082 ORTHO05D003497 5.8e-17 91.3 103 53.4
VMungo0464G0847 Vigna mungo HOM05D003082 ORTHO05D003497 5.8e-17 91.3 113 54.0
MSTRG.15930 Avicennia marina HOM05D003082 ORTHO05D003497 7.6e-17 90.9 102 52.9
TWI81G0860 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 7.6e-17 90.9 116 50.0
Eucgr.F02897 Eucalyptus grandis HOM05D003082 ORTHO05D003497 9.9e-17 90.5 108 52.8
Solyc02g079060.3 Solanum lycopersicum HOM05D003082 ORTHO05D003497 1.3e-16 90.1 108 54.6
Nn7g36916 Nelumbo nucifera HOM05D003082 ORTHO05D003497 1.7e-16 89.7 108 51.9
Aqoxy3G02868 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 2.2e-16 89.4 103 50.5
Nitab4.5_0009301g0020 Nicotiana tabacum HOM05D003082 ORTHO05D003497 2.2e-16 89.4 108 51.9
AT1G66070 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 4.9e-16 88.2 110 50.9
Haze_00671 Corylus avellana HOM05D003082 ORTHO05D003497 4.9e-16 88.2 110 50.9
Atru.chr9.1638 Acer truncatum HOM05D003082 ORTHO05D003497 1.1e-15 87.0 111 50.5
CARHR058010 Cardamine hirsuta HOM05D003082 ORTHO05D003497 1.1e-15 87.0 109 53.2
Dinv20511 Davidia involucrata HOM05D003082 ORTHO05D003497 1.9e-15 86.3 103 51.5
Dinv20531 Davidia involucrata HOM05D003082 ORTHO05D003497 1.9e-15 86.3 103 51.5
MD06G1026500 Malus domestica HOM05D003082 ORTHO05D003497 3.2e-15 85.5 107 52.3
arahy.Tifrunner.gnm1.ann1.W7Y30R Arachis hypogaea HOM05D003082 ORTHO05D003497 7.1e-15 84.3 112 52.7
Thhalv10019428m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 9.3e-15 84.0 114 47.4
PGR042G1487 Punica granatum HOM05D003082 ORTHO05D003497 9.3e-15 84.0 114 50.0
CDE07G0767 Ceratophyllum demersum HOM05D003082 ORTHO05D003497 1.2e-14 83.6 115 47.0
Ah.03g147370 Amaranthus hybridus HOM05D003082 ORTHO05D003497 1.6e-14 83.2 111 48.6
Sopen02g023870 Solanum pennellii HOM05D003082 ORTHO05D003497 1.6e-14 83.2 110 51.8
Nn2g12687 Nelumbo nucifera HOM05D003082 ORTHO05D003497 2.1e-14 82.8 108 49.1
Gorai.011G194600 Gossypium raimondii HOM05D003082 ORTHO05D003497 3.5e-14 82.0 106 45.3
FvH4_5g23100 Fragaria vesca HOM05D003082 ORTHO05D003497 4.6e-14 81.6 96 52.1
FAN18G1653 Fragaria x ananassa HOM05D003082 ORTHO05D003497 4.6e-14 81.6 96 52.1
FAN18G4367 Fragaria x ananassa HOM05D003082 ORTHO05D003497 4.6e-14 81.6 96 52.1
GSVIVG01000052001 Vitis vinifera HOM05D003082 ORTHO05D003497 6.0e-14 81.3 124 42.7
RhsimUnG0060500 Rhododendron simsii HOM05D003082 ORTHO05D003497 1.7e-13 79.7 89 56.2
Medtr6g478160 Medicago truncatula HOM05D003082 ORTHO05D003497 2.3e-13 79.3 113 50.4
PSO170G2980 Papaver somniferum HOM05D003082 ORTHO05D003497 3.0e-13 79.0 103 50.5
FAN04G2030 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.9e-13 78.6 112 45.5
Nitab4.5_0012269g0010 Nicotiana tabacum HOM05D003082 ORTHO05D003497 3.9e-13 78.6 107 50.5
ATR0743G023 Amborella trichopoda HOM05D003082 ORTHO05D003497 5.1e-13 78.2 111 44.1
Hund04328 Selenicereus undatus HOM05D003082 ORTHO05D003497 5.1e-13 78.2 109 53.2
FAN08G1589 Fragaria x ananassa HOM05D003082 ORTHO05D003497 6.6e-13 77.8 96 50.0
Lsat_1_v5_gn_2_38821 Lactuca sativa HOM05D003082 ORTHO05D003497 1.1e-12 77.0 109 48.6
PSO063G3459 Papaver somniferum HOM05D003082 ORTHO05D003497 1.1e-12 77.0 103 49.5
Rhsim10G0103000 Rhododendron simsii HOM05D003082 ORTHO05D003497 1.5e-12 76.6 89 55.1
SGA_v2.0_scaffold7G03956 Striga asiatica HOM05D003082 ORTHO05D003497 1.5e-12 76.6 164 40.2
unitig_46.g18626 Utricularia gibba HOM05D003082 ORTHO05D003497 1.5e-12 76.6 114 47.4
FAN13G0663 Fragaria x ananassa HOM05D003082 ORTHO05D003497 1.9e-12 76.3 96 47.9
FAN13G1153 Fragaria x ananassa HOM05D003082 ORTHO05D003497 1.9e-12 76.3 96 47.9
Gohir.D10G173900 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.9e-12 76.3 106 43.4
DCAR_009639 Daucus carota HOM05D003082 ORTHO05D003497 2.5e-12 75.9 93 54.8
arahy.Tifrunner.gnm1.ann1.TD12MZ Arachis hypogaea HOM05D003082 ORTHO05D003497 3.3e-12 75.5 114 50.0
BcaB01g01292 Brassica carinata HOM05D003082 ORTHO05D003497 3.3e-12 75.5 102 52.0
MBI03_g35442_MAGBIO Magnolia biondii HOM05D003082 ORTHO05D003497 4.3e-12 75.1 112 46.4
Os02g0122300 Oryza sativa ssp. japonica HOM05D003082 ORTHO05D003497 4.3e-12 75.1 109 45.9
CAN.G1181.25 Capsicum annuum HOM05D003082 ORTHO05D003497 7.4e-12 74.3 111 49.5
Lalb_Chr24g0398531 Lupinus albus HOM05D003082 ORTHO05D003497 7.4e-12 74.3 122 44.3
Zm00001eb230510 Zea mays HOM05D003082 ORTHO05D003497 7.4e-12 74.3 109 43.1
PSO135G0099 Papaver somniferum HOM05D003082 ORTHO05D003497 2.1e-11 72.8 108 46.3
Thecc.04G291800 Theobroma cacao HOM05D003082 ORTHO05D003497 4.8e-11 71.6 103 46.6
Actinidia28791 Actinidia chinensis HOM05D003082 ORTHO05D003497 8.1e-11 70.9 89 50.6
PSO384G2055 Papaver somniferum HOM05D003082 ORTHO05D003497 8.1e-11 70.9 113 44.2
Zm00001eb208430 Zea mays HOM05D003082 ORTHO05D003497 1.1e-10 70.5 110 43.6
Pp3c4_20470 Physcomitrium patens HOM05D003082 ORTHO05D003497 1.4e-10 70.1 111 45.0
CSS0011396 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 1.8e-10 69.7 102 44.1
CSS0020472 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 1.8e-10 69.7 102 44.1
Duzib151G0431 Durio zibethinus HOM05D003082 ORTHO05D003497 1.8e-10 69.7 103 46.6
Sabra17G0112200 Salix brachista HOM05D003082 ORTHO05D003497 1.8e-10 69.7 80 55.0
Sabra17G0112800 Salix brachista HOM05D003082 ORTHO05D003497 3.1e-10 68.9 81 53.1
Gorai.006G260000 Gossypium raimondii HOM05D003082 ORTHO05D003497 6.9e-10 67.8 82 52.4
MD16G1279500 Malus domestica HOM05D003082 ORTHO05D003497 9.0e-10 67.4 90 47.8
Psat1g121400 Pisum sativum HOM05D003082 ORTHO05D003497 9.0e-10 67.4 112 45.5
TPR.G19886 Trifolium pratense HOM05D003082 ORTHO05D003497 1.5e-09 66.6 128 41.4
CSS0037921 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 4.5e-09 65.1 125 40.0
Actinidia17178 Actinidia chinensis HOM05D003082 ORTHO05D003497 2.2e-08 62.8 62 59.7
Sabra17G0115000 Salix brachista HOM05D003082 ORTHO05D003497 2.9e-08 62.4 67 59.7
AUR62007100 Chenopodium quinoa HOM05D003082 ORTHO05D003497 3.8e-08 62.0 76 53.9
Oeu038230.1 Olea europaea HOM05D003082 ORTHO05D003497 4.9e-08 61.6 54 66.7
Lj6P692T22 Lonicera japonica HOM05D003082 ORTHO05D003497 1.4e-07 60.1 68 52.9
Pp3c13_8920 Physcomitrium patens HOM05D003082 ORTHO05D003497 2.4e-07 59.3 115 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3198 Anthoceros agrestis HOM05D003082 ORTHO05D003497 4.2e-07 58.5 124 39.5
AUR62019963 Chenopodium quinoa HOM05D003082 ORTHO05D003497 4.2e-07 58.5 78 52.6
HPP92_018911 Vanilla planifolia HOM05D003082 ORTHO05D003497 4.2e-07 58.5 116 38.8
SMO228G0136 Selaginella moellendorffii HOM05D003082 ORTHO05D003497 1.2e-06 57.0 118 39.0
HanXRQChr04g0109401 Helianthus annuus HOM05D003082 ORTHO05D003497 6.0e-06 54.7 62 58.1


User provided reference genes

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