Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 2.2e-286 988.4 548 100.0
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 6.0e-268 927.2 548 94.5
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 6.0e-268 927.2 548 94.5
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 7.8e-268 926.8 548 94.5
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.2e-207 726.9 548 77.6
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.9e-205 719.5 549 78.0
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 2.0e-186 656.4 605 69.8
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 2.5e-125 453.4 568 56.2
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 9.6e-125 451.4 582 55.0
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 2.1e-124 450.3 586 54.6
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.2e-122 444.5 589 52.8
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 8.7e-118 428.3 529 53.9
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 5.1e-110 402.5 576 50.2
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.7e-79 300.4 565 40.9
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 4.4e-53 213.4 577 34.8
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 3.2e-51 207.2 593 35.2
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 6.8e-46 189.5 589 33.4
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.5e-45 188.3 582 33.2
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.0e-45 188.0 587 32.9
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 5.8e-45 186.4 590 33.4
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 9.8e-45 185.7 567 32.8
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.7e-44 184.9 590 32.4
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 1.1e-43 182.2 633 32.9
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.4e-43 181.8 644 32.3
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 2.4e-43 181.0 612 30.9
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 3.2e-43 180.6 602 32.4
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 2.7e-42 177.6 623 32.3
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 2.7e-42 177.6 582 30.9
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 4.6e-42 176.8 519 33.3
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 2.3e-41 174.5 334 38.9
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.3e-41 174.5 595 31.1
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.5e-40 171.8 615 30.4
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.9e-40 171.4 585 30.9
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 5.6e-40 169.9 604 31.5
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 7.3e-40 169.5 640 30.3
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.6e-39 168.3 619 31.2
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 2.8e-39 167.5 575 31.7
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 3.6e-39 167.2 594 29.3
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 8.1e-39 166.0 608 29.3
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 2.3e-38 164.5 572 30.9
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 2.3e-38 164.5 638 31.0
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 5.2e-38 163.3 583 31.6
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 6.8e-38 162.9 628 30.9
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.2e-37 162.2 579 31.4
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 2.0e-37 161.4 573 30.7
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 2.0e-37 161.4 579 30.7
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.6e-37 161.0 586 30.7
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 3.4e-37 160.6 618 30.1
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 7.6e-37 159.5 585 30.9
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.2e-36 157.9 365 32.9
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 2.2e-36 157.9 509 32.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 4.9e-36 156.8 670 29.1
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 8.4e-36 156.0 563 30.6
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 2.4e-35 154.5 382 36.4
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.2e-35 154.1 527 29.4
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 3.2e-35 154.1 634 29.2
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 3.2e-35 154.1 591 30.6
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 3.2e-35 154.1 634 31.2
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 3.2e-35 154.1 586 30.4
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.2e-34 152.1 527 29.2
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 3.0e-33 147.5 358 34.9
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 3.0e-33 147.5 468 30.6
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.1e-33 146.7 555 29.5
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 5.1e-33 146.7 598 29.4
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 5.1e-33 146.7 234 41.5
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 6.6e-33 146.4 357 35.0
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 8.6e-33 146.0 361 33.8
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 1.1e-32 145.6 271 37.6
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.9e-32 144.8 593 31.4
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.9e-32 144.8 258 41.1
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 2.5e-32 144.4 442 31.2
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 7.3e-32 142.9 616 29.9
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.2e-31 142.1 226 42.5
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 6.2e-31 139.8 375 34.4
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.8e-30 138.3 524 31.1
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 1.8e-30 138.3 627 28.5
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 2.0e-29 134.8 226 38.1
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 3.4e-29 134.0 666 27.3
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 5.8e-29 133.3 595 29.1
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 5.8e-29 133.3 624 28.8
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.7e-28 131.7 588 29.3
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 1.7e-28 131.7 464 31.2
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.2e-28 131.3 611 28.8
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 6.4e-28 129.8 285 35.8
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.1e-27 129.0 619 28.8
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 2.4e-27 127.9 602 29.6
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.1e-26 124.8 673 26.6
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 7.8e-26 122.9 525 28.6
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 8.7e-25 119.4 658 26.0
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 8.7e-25 119.4 507 27.8
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 9.6e-24 115.9 463 30.0
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.8e-23 113.6 551 29.2
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 6.2e-23 113.2 374 31.0
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 8.1e-23 112.8 522 29.3
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 8.1e-23 112.8 462 30.3
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.1e-22 112.5 451 27.5
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 2.4e-22 111.3 584 28.1
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 6.9e-22 109.8 381 28.9
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.3e-20 105.5 217 36.4
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.7e-20 105.1 328 32.0
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 2.9e-20 104.4 205 36.6
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 3.8e-20 104.0 583 28.0
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 6.4e-20 103.2 461 27.8
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 8.4e-20 102.8 636 26.4
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 1.1e-19 102.4 382 28.8
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 7.1e-19 99.8 253 34.4
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.0e-17 95.9 235 33.2
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.3e-17 94.7 202 36.6
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 6.7e-17 93.2 256 30.5
BcaB04g18327 Brassica carinata HOM05D000073 ORTHO05D000033 7.4e-16 89.7 59 76.3
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 3.6e-15 87.4 194 35.1
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.4e-14 84.7 549 26.8
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 9.0e-14 82.8 196 33.7
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.1e-11 75.9 92 46.7
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.2e-10 72.4 368 29.3
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 3.0e-09 67.8 63 50.8


User provided reference genes

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