Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 1.6e-166 589.3 294 100.0
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 1.8e-162 575.9 294 97.6
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 2.4e-162 575.5 294 97.6
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 7.6e-161 570.5 297 97.0
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 2.5e-159 565.5 295 96.3
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.0e-149 533.5 298 91.3
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.8e-141 506.1 304 86.2
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 8.2e-123 444.1 294 78.6
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 1.8e-122 443.0 299 78.9
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.8e-122 443.0 306 76.8
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 4.5e-121 438.3 299 78.3
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 6.5e-120 434.5 300 75.7
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 1.9e-119 433.0 300 74.3
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 4.2e-119 431.8 280 78.6
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 5.5e-119 431.4 298 75.5
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.4e-117 426.8 301 73.1
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 1.3e-115 420.2 294 74.1
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.0e-112 410.6 297 70.7
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 1.7e-112 409.8 294 71.4
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 2.2e-112 409.5 297 71.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.9e-112 409.1 297 70.7
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.9e-112 409.1 290 70.7
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 3.8e-112 408.7 294 71.8
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 4.2e-111 405.2 300 70.3
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 7.2e-111 404.4 294 71.4
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 7.2e-111 404.4 303 70.0
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 4.7e-110 401.7 296 69.3
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 2.3e-109 399.4 293 69.6
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 8.8e-109 397.5 300 69.3
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 2.0e-108 396.4 300 68.7
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 2.6e-108 396.0 301 69.4
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 3.7e-107 392.1 294 68.0
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 6.3e-107 391.3 305 70.2
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 8.3e-107 391.0 284 69.0
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 4.1e-106 388.7 291 68.4
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 4.1e-106 388.7 291 68.0
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 4.1e-106 388.7 290 68.6
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 4.1e-106 388.7 299 68.6
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 7.0e-106 387.9 294 67.3
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.2e-105 387.1 292 68.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 7.7e-105 384.4 289 69.2
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 3.8e-104 382.1 304 68.1
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 6.6e-104 381.3 302 66.9
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 2.5e-103 379.4 300 65.3
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 3.3e-103 379.0 302 66.2
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 4.3e-103 378.6 300 67.0
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 5.6e-103 378.3 294 69.0
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 1.2e-102 377.1 283 66.1
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 1.6e-102 376.7 290 67.6
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.8e-102 375.9 268 70.5
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 6.1e-102 374.8 295 67.8
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 6.1e-102 374.8 278 67.3
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 2.3e-101 372.9 298 66.8
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.0e-101 372.1 309 64.4
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 5.2e-101 371.7 299 66.2
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 5.2e-101 371.7 315 63.5
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 5.2e-101 371.7 267 68.2
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 1.5e-100 370.2 292 65.4
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.2e-99 366.3 315 62.9
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 8.3e-99 364.4 297 63.3
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 1.4e-98 363.6 268 68.3
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 2.4e-98 362.8 292 65.4
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 2.4e-98 362.8 292 65.1
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.0e-97 359.8 315 61.0
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 3.5e-97 359.0 303 63.7
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 4.6e-97 358.6 289 65.1
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 5.9e-97 358.2 296 64.5
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 3.0e-96 355.9 279 66.3
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 3.9e-96 355.5 323 60.4
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 6.6e-96 354.8 299 63.5
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.1e-95 354.0 340 57.4
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 3.3e-95 352.4 291 63.2
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 7.3e-95 351.3 288 63.9
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 7.3e-95 351.3 285 67.0
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 2.3e-93 346.3 292 61.3
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 2.3e-93 346.3 302 61.9
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 6.8e-93 344.7 330 58.8
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.5e-92 343.6 287 63.4
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.6e-92 342.8 193 87.0
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 9.8e-92 340.9 308 59.7
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 3.2e-90 335.9 290 63.8
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 4.1e-90 335.5 293 59.7
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 5.4e-90 335.1 287 63.1
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 9.2e-90 334.3 295 60.0
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 1.3e-88 330.5 297 59.6
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 1.8e-85 320.1 299 59.9
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 2.0e-84 316.6 319 56.1
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 3.4e-84 315.8 271 60.5
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 1.7e-83 313.5 270 62.6
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.9e-82 310.1 282 61.0
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 1.2e-81 307.4 296 59.1
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 1.0e-80 304.3 284 58.1
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.3e-80 303.9 277 59.9
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.8e-77 293.5 247 61.9
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 2.3e-77 293.1 305 57.0
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 2.2e-75 286.6 303 54.5
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 1.9e-74 283.5 306 50.7
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 3.5e-73 279.3 225 61.8
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 3.8e-67 259.2 292 51.4
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.9e-66 256.9 193 67.9
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.5e-60 237.3 292 47.3
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 3.8e-59 232.6 296 45.3
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 8.4e-59 231.5 175 65.7
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 1.4e-58 230.7 184 67.4
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 1.8e-56 223.8 207 60.4
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 2.1e-54 216.9 165 66.7
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 8.1e-54 214.9 219 53.4
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 3.1e-53 213.0 141 68.8
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 3.4e-52 209.5 177 63.3
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 7.6e-52 208.4 153 68.6
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 6.7e-48 195.3 293 41.3
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 4.3e-47 192.6 292 40.8
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.4e-47 191.8 160 63.1
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 6.9e-45 185.3 303 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 7.6e-44 181.8 278 39.2
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.1e-41 173.7 153 60.8
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 4.6e-41 172.6 124 70.2
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.9e-36 155.6 156 53.8
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.3e-32 144.4 98 79.6
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 5.9e-28 129.0 105 64.8
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 7.7e-28 128.6 89 62.9
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 1.0e-27 128.3 95 67.4
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 3.2e-26 123.2 137 56.2
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 2.7e-25 120.2 115 56.5
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 6.1e-25 119.0 89 75.3
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 3.9e-24 116.3 157 49.7
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 3.3e-23 113.2 104 61.5
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 1.5e-20 104.4 102 59.8
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 4.5e-20 102.8 277 32.9
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 6.1e-17 92.4 88 60.2
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 4.4e-15 86.3 77 61.0
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 1.3e-14 84.7 240 28.8
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 1.4e-08 64.7 169 29.6


User provided reference genes

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