Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.5e-264 915.6 458 100.0
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.5e-264 915.6 458 100.0
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.2e-258 896.0 456 98.2
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 8.0e-258 893.3 456 97.8
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 8.0e-258 893.3 456 97.8
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 2.7e-253 878.2 458 95.9
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 2.3e-236 822.0 458 90.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 1.5e-224 782.7 458 86.5
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 1.2e-221 773.1 458 86.0
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 4.7e-218 761.1 438 86.5
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.8e-204 716.1 458 78.4
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.8e-201 706.1 386 89.1
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.3e-178 630.2 438 73.1
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 9.1e-177 624.0 352 87.5
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 3.1e-153 545.8 448 62.1
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.7e-149 531.9 451 60.1
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.2e-147 527.3 452 59.7
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.7e-146 523.5 452 59.5
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 2.2e-146 523.1 441 60.5
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.1e-145 518.8 453 58.5
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 7.0e-145 518.1 466 58.4
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 5.9e-144 515.0 436 60.1
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.0e-143 514.2 443 58.9
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 5.0e-143 511.9 440 58.6
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 1.1e-142 510.8 448 58.7
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 4.2e-142 508.8 439 59.2
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 8.8e-140 501.1 457 58.4
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.6e-139 499.6 479 56.4
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 2.6e-139 499.6 421 60.8
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 5.7e-139 498.4 465 57.2
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 9.8e-139 497.7 438 60.0
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 2.8e-138 496.1 430 56.3
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 4.9e-138 495.4 444 58.1
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 8.3e-138 494.6 433 58.0
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-137 494.2 449 58.4
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 2.0e-136 490.0 436 57.3
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.5e-136 488.8 436 56.2
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.0e-135 487.6 436 56.0
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.3e-135 487.3 436 56.2
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 3.8e-135 485.7 433 57.3
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.9e-134 483.4 459 55.8
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 2.8e-133 479.6 441 56.2
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 2.8e-133 479.6 443 56.9
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 4.0e-132 475.7 471 54.6
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 5.2e-132 475.3 440 57.3
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 1.5e-131 473.8 452 54.6
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 2.0e-131 473.4 460 56.1
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 3.4e-131 472.6 438 54.1
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 1.3e-130 470.7 443 56.7
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.3e-130 470.7 452 55.1
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 3.7e-130 469.2 421 55.6
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 4.9e-130 468.8 435 55.6
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 6.4e-130 468.4 480 54.4
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.1e-129 467.6 424 56.4
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 1.1e-129 467.6 437 56.5
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.4e-129 467.2 433 56.1
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.4e-129 467.2 378 61.4
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.8e-129 466.8 419 57.5
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.7e-128 463.0 427 55.5
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 4.6e-128 462.2 445 55.7
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 2.3e-127 459.9 446 55.4
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 6.6e-127 458.4 419 55.1
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.3e-126 455.7 424 55.7
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 1.2e-125 454.1 518 48.5
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.8e-125 453.0 380 60.3
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 1.2e-123 447.6 495 50.1
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 3.2e-121 439.5 385 57.9
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 5.4e-121 438.7 434 51.4
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 1.3e-119 434.1 434 52.1
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.7e-119 433.7 480 50.6
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 5.0e-119 432.2 385 56.9
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.9e-118 430.3 381 57.5
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.3e-118 429.5 387 57.6
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.3e-116 423.3 440 50.2
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.0e-115 420.2 453 52.3
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 2.0e-115 420.2 426 52.1
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 5.8e-115 418.7 380 56.3
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.3e-114 417.5 442 48.6
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 4.9e-114 415.6 433 50.1
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 1.4e-113 414.1 459 51.4
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 2.4e-113 413.3 442 50.2
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 3.2e-113 412.9 383 54.3
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 3.5e-112 409.5 444 52.3
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.1e-111 405.6 381 54.1
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.1e-110 404.4 380 55.0
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 3.6e-109 399.4 374 53.2
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 1.5e-107 394.0 379 54.6
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 3.5e-104 382.9 326 58.3
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.7e-103 380.6 430 45.3
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 3.0e-103 379.8 406 51.0
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.1e-100 371.3 394 49.5
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 6.9e-100 368.6 438 46.6
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 3.4e-99 366.3 379 49.9
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 3.8e-98 362.8 426 49.1
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.4e-97 360.9 442 45.5
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 7.1e-97 358.6 427 47.5
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.6e-96 357.5 460 44.6
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 3.5e-96 356.3 442 45.7
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.3e-95 354.4 463 46.2
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 3.6e-93 346.3 437 46.2
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.1e-92 344.7 444 43.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 1.1e-92 344.7 444 43.9
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 4.0e-92 342.8 445 43.1
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.2e-91 341.3 469 44.1
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 3.8e-90 336.3 343 53.4
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 8.4e-90 335.1 438 44.3
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 2.7e-88 330.1 294 55.4
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.9e-86 323.9 426 41.1
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.6e-86 322.4 432 39.6
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.4e-84 317.8 393 46.3
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.8e-84 317.4 447 42.3
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 2.6e-83 313.5 425 45.2
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.6e-83 313.5 445 42.7
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.4e-83 313.2 472 42.8
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.3e-82 311.2 445 42.5
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.4e-81 307.0 397 44.3
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.6e-80 302.8 480 37.9
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.7e-79 298.9 474 37.8
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 7.4e-78 295.4 349 47.9
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 6.7e-71 272.3 273 54.2
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.4e-65 254.6 431 36.0
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.6e-64 251.1 396 37.4
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.6e-51 207.2 278 41.7
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.9e-49 201.1 416 31.5
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 6.1e-24 116.3 138 46.4
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 5.2e-23 113.2 147 42.9
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.3e-10 71.2 64 62.5
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.3e-10 71.2 107 40.2
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 8.0e-08 62.8 80 57.5


User provided reference genes

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