Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p09520 Brassica napus HOM05D009131 ORTHO05D011137 3.2e-147 525.0 260 100.0
BolSC28t60388H Brassica oleracea HOM05D009131 ORTHO05D011137 1.0e-71 274.2 136 99.3
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 4.1e-49 199.1 130 74.6
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 4.1e-49 199.1 130 74.6
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 6.1e-45 185.3 130 72.3
CARHR287230 Cardamine hirsuta HOM05D009131 ORTHO05D011137 3.5e-40 169.5 123 69.1
CAN.G950.4 Capsicum annuum HOM05D009131 ORTHO05D011137 4.9e-26 122.5 127 51.2
PGSC0003DMG400034591 Solanum tuberosum HOM05D009131 ORTHO05D011137 4.9e-26 122.5 130 52.3
PGSC0003DMG402008771 Solanum tuberosum HOM05D009131 ORTHO05D011137 4.9e-26 122.5 130 52.3
SGA_v2.0_scaffold477G52170 Striga asiatica HOM05D009131 ORTHO05D011137 2.4e-25 120.2 130 50.8
Solyc00g500116.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 4.1e-25 119.4 130 50.0
Solyc00g500099.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 5.4e-25 119.0 130 51.5
Solyc00g500272.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 5.4e-25 119.0 130 51.5
Solyc00g500318.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 5.4e-25 119.0 130 51.5
Solyc00g500361.1 Solanum lycopersicum HOM05D001325 ORTHO05D011137 5.4e-25 119.0 130 51.5
Lj2P1230T116 Lonicera japonica HOM05D009131 ORTHO05D011137 8.6e-23 111.7 150 42.7
Lsat_1_v5_gn_1_2620 Lactuca sativa HOM05D009131 ORTHO05D011137 1.5e-22 110.9 144 43.1
Lsat_1_v5_gn_7_25441 Lactuca sativa HOM05D009131 ORTHO05D011137 1.5e-22 110.9 144 43.1
LjContig00315g0007090 Lotus japonicus HOM05D009131 ORTHO05D011137 5.6e-22 109.0 122 48.4
LjContig00439g0010199 Lotus japonicus HOM05D009131 ORTHO05D011137 5.6e-22 109.0 122 48.4
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 3.6e-21 106.3 145 40.0
PGR028G0024 Punica granatum HOM05D009131 ORTHO05D011137 1.8e-20 104.0 128 45.3
PGR069G0015 Punica granatum HOM05D009131 ORTHO05D011137 1.8e-20 104.0 128 45.3
PGR069G0016 Punica granatum HOM05D009131 ORTHO05D011137 1.8e-20 104.0 128 45.3
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.8e-20 104.0 128 45.3
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 4.0e-20 102.8 142 40.1
HanXRQMTg0579611 Helianthus annuus HOM05D009131 ORTHO05D011137 8.9e-20 101.7 130 42.3
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.2e-19 101.3 94 52.1
Ah.03g144220 Amaranthus hybridus HOM05D009131 ORTHO05D011137 3.4e-19 99.8 145 38.6
Solyc00g500170.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 3.7e-18 96.3 130 43.8
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 3.2e-17 93.2 92 50.0
Lsat_1_v5_gn_5_16481 Lactuca sativa HOM05D009131 ORTHO05D011137 1.6e-16 90.9 104 46.2
unitig_87.g27976 Utricularia gibba HOM05D009131 ORTHO05D011137 2.7e-16 90.1 144 38.9
MELO3C027715.2 Cucumis melo HOM05D000743 ORTHO05D011137 3.5e-16 89.7 130 40.8
CsaV3_UNG208550 Cucumis sativus L. HOM05D000533 ORTHO05D001069 4.3e-14 82.8 120 45.8
Solyc02g085520.4 Solanum lycopersicum HOM05D003478 ORTHO05D004196 4.3e-14 82.8 79 55.7
CAN.G1923.1 Capsicum annuum HOM05D009131 ORTHO05D011137 6.2e-13 79.0 63 58.7
CAN.G1109.13 Capsicum annuum HOM05D009131 ORTHO05D011137 8.9e-12 75.1 57 63.2
CAN.G1167.18 Capsicum annuum HOM05D009131 ORTHO05D011137 8.9e-12 75.1 57 63.2
Eucgr.I01853 Eucalyptus grandis HOM05D009131 ORTHO05D011137 1.9e-09 67.4 61 52.5
SHI29301 Sapria himalayana HOM05D008814 ORTHO05D010812 9.2e-09 65.1 97 36.1
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 2.1e-08 63.9 47 72.3
CsaV3_UNG208200 Cucumis sativus L. HOM05D009131 ORTHO05D011137 5.0e-07 59.3 132 31.1
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 7.3e-06 55.5 28 85.7
CDE02G4630 Ceratophyllum demersum HOM05D009131 ORTHO05D011137 9.5e-06 55.1 36 75.0


User provided reference genes

Program Settings