Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.8e-111 406.0 211 100.0
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.8e-111 406.0 211 100.0
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.8e-111 406.0 211 100.0
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 7.8e-107 390.6 211 95.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.7e-98 362.8 186 100.0
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.7e-98 362.8 186 100.0
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.5e-81 305.8 170 93.5
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.6e-72 276.6 185 82.7
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 2.1e-72 276.2 185 82.7
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.4e-71 273.5 185 81.6
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 4.4e-70 268.5 185 80.5
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.0e-62 243.0 185 74.1
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.0e-62 243.0 185 74.1
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 1.3e-61 240.4 185 74.1
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 1.3e-61 240.4 185 74.1
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.9e-61 238.4 185 73.0
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 1.2e-59 233.8 185 71.9
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 2.1e-59 233.0 185 73.0
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 2.1e-59 233.0 185 73.0
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 2.3e-58 229.6 178 72.5
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 2.3e-58 229.6 178 72.5
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 3.0e-58 229.2 158 80.4
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 3.0e-58 229.2 185 71.4
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 6.7e-58 228.0 185 71.4
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 8.7e-58 227.6 185 71.4
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 8.7e-58 227.6 185 71.4
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 8.7e-58 227.6 185 71.4
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 1.9e-57 226.5 185 70.3
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 5.6e-57 224.9 185 71.4
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 5.6e-57 224.9 185 71.4
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 7.4e-57 224.6 185 70.8
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.3e-56 223.8 185 69.2
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.6e-56 223.4 184 71.2
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.6e-56 223.4 184 71.2
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.7e-56 222.2 182 70.3
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 8.1e-56 221.1 185 69.2
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 8.1e-56 221.1 185 69.2
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.4e-55 220.3 184 70.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.8e-55 219.9 139 84.2
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 4.0e-55 218.8 184 68.5
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 6.9e-55 218.0 174 71.3
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 6.9e-55 218.0 174 71.3
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 6.9e-55 218.0 134 85.1
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.2e-54 217.2 184 67.9
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.2e-54 217.2 185 69.2
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 2.0e-54 216.5 185 69.2
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 3.4e-54 215.7 185 68.1
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 7.6e-54 214.5 183 68.3
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.2e-53 213.0 142 80.3
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.9e-53 212.6 176 68.8
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.9e-52 209.9 162 73.5
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.9e-52 209.9 184 67.4
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.9e-52 209.9 184 67.4
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 2.5e-52 209.5 182 66.5
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.1e-52 208.0 134 80.6
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.2e-51 207.2 139 80.6
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.7e-51 206.1 146 78.8
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 3.5e-51 205.7 162 72.2
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.3e-48 197.2 152 73.0
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.6e-48 196.8 129 79.8
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 5.3e-47 191.8 178 63.5
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 5.3e-47 191.8 133 78.2
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 9.0e-47 191.0 134 78.4
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.5e-46 190.3 150 72.0
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.5e-46 190.3 150 72.0
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.6e-46 189.5 166 67.5
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-45 186.8 119 82.4
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 3.8e-45 185.7 142 72.5
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 5.0e-45 185.3 119 84.0
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 5.0e-45 185.3 119 84.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.5e-44 183.0 107 89.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 3.5e-43 179.1 96 94.8
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 6.1e-43 178.3 107 88.8
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 7.9e-43 177.9 109 86.2
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.0e-42 177.6 158 66.5
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.0e-42 177.6 154 66.2
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 1.1e-39 167.5 100 86.0
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.2e-38 164.1 134 69.4
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 9.4e-28 127.9 78 84.6
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.5e-25 120.6 115 63.5
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 3.7e-24 115.9 79 78.5
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 3.7e-24 115.9 79 78.5
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 2.4e-23 113.2 99 66.7
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.3e-23 112.1 77 76.6
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 4.5e-22 109.0 107 58.9
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 7.7e-22 108.2 63 90.5
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.5e-20 103.2 76 75.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.2e-19 100.9 68 79.4
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 2.3e-18 96.7 73 71.2
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 4.0e-18 95.9 97 61.9
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 6.7e-18 95.1 86 66.3
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 8.8e-18 94.7 56 80.4
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 3.7e-16 89.4 76 65.8
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 8.2e-16 88.2 86 61.6
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 4.1e-15 85.9 65 70.8
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 4.1e-15 85.9 47 91.5
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.8e-13 79.3 68 61.8
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.9e-12 77.0 84 58.3
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.5e-09 67.4 49 71.4
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-09 67.0 77 54.5
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 7.5e-09 65.1 39 79.5
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 2.2e-08 63.5 75 56.0
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 2.8e-08 63.2 45 75.6
SHI50631 Sapria himalayana HOM05D007533 ORTHO05D009622 4.5e-06 55.8 26 92.3


User provided reference genes

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