Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p08380 Brassica napus HOM05D001791 ORTHO05D024528 1.6e-65 252.7 130 100.0
BolC5t29685H Brassica oleracea HOM05D001791 ORTHO05D024528 1.5e-55 219.5 129 90.7
BolC1t02701H Brassica oleracea HOM05D001791 ORTHO05D024528 1.9e-55 219.2 129 89.9
BraA01t03205Z Brassica rapa HOM05D001791 ORTHO05D001787 2.4e-34 149.1 84 91.7
C01p20740 Brassica napus HOM05D001791 ORTHO05D001787 1.3e-27 126.7 69 92.8
C05p10820 Brassica napus HOM05D001791 ORTHO05D001787 6.0e-25 117.9 73 84.9
BolC5t29826H Brassica oleracea HOM05D001791 ORTHO05D001787 6.0e-25 117.9 73 84.9
BraA06t24112Z Brassica rapa HOM05D001791 ORTHO05D001787 7.8e-25 117.5 73 86.3
BcaC03g16604 Brassica carinata HOM05D001791 ORTHO05D001787 8.6e-24 114.0 134 53.7
A06p09250 Brassica napus HOM05D001791 ORTHO05D001787 1.5e-23 113.2 74 83.8
BcaB07g31812 Brassica carinata HOM05D001791 ORTHO05D001787 1.9e-23 112.8 70 85.7
BcaB01g05490 Brassica carinata HOM05D001791 ORTHO05D001787 3.3e-23 112.1 61 91.8
AT1G12330 Arabidopsis thaliana HOM05D001791 ORTHO05D001787 2.1e-22 109.4 73 82.2
Carub.0001s1200 Capsella rubella HOM05D001791 ORTHO05D001787 2.1e-22 109.4 73 82.2
CARHR012630 Cardamine hirsuta HOM05D001791 ORTHO05D001787 2.1e-22 109.4 73 82.2
Sp1g10950 Schrenkiella parvula HOM05D001791 ORTHO05D001787 8.1e-22 107.5 73 80.8
Thhalv10007416m.g Eutrema salsugineum HOM05D001791 ORTHO05D001787 1.1e-21 107.1 73 80.8
AL1G23660 Arabidopsis lyrata HOM05D001791 ORTHO05D001787 1.8e-21 106.3 73 80.8
C08p15380 Brassica napus HOM05D001791 ORTHO05D001787 3.4e-20 102.1 129 51.9
Aa31LG1G2280 Aethionema arabicum HOM05D001793 ORTHO05D001938 7.6e-20 100.9 73 79.5
A02p28720 Brassica napus HOM05D001791 ORTHO05D001787 1.3e-19 100.1 57 86.0
BolC8t49166H Brassica oleracea HOM05D001791 ORTHO05D001787 1.7e-19 99.8 130 53.1
BcaB03g13193 Brassica carinata HOM05D001791 ORTHO05D001787 2.2e-19 99.4 73 76.7
THA.LOC104818392 Tarenaya hassleriana HOM05D001791 ORTHO05D001787 2.2e-19 99.4 92 67.4
BcaB03g13194 Brassica carinata HOM05D001791 ORTHO05D001787 6.4e-19 97.8 80 67.5
A08p32880 Brassica napus HOM05D001791 ORTHO05D001787 6.4e-19 97.8 142 50.0
BraA08t35210Z Brassica rapa HOM05D001791 ORTHO05D001787 6.4e-19 97.8 142 50.0
Gohir.A08G174000 Gossypium hirsutum HOM05D001791 ORTHO05D001787 5.1e-16 88.2 82 58.5
Gorai.004G202800 Gossypium raimondii HOM05D001791 ORTHO05D001787 5.1e-16 88.2 82 58.5
Duzib205G2035 Durio zibethinus HOM05D001791 ORTHO05D001787 8.7e-16 87.4 82 58.5
Sabra03G0080200 Salix brachista HOM05D001791 ORTHO05D001787 8.7e-16 87.4 82 59.8
QL05p030002 Quercus lobata HOM05D001791 ORTHO05D001787 1.1e-15 87.0 80 57.5
QL12p015057 Quercus lobata HOM05D001791 ORTHO05D001787 1.1e-15 87.0 80 57.5
Manes.02G033200 Manihot esculenta HOM05D001791 ORTHO05D001787 1.9e-15 86.3 81 56.8
Lj4g0014037 Lotus japonicus HOM05D001791 ORTHO05D001787 4.3e-15 85.1 71 66.2
Thecc.03G262300 Theobroma cacao HOM05D001791 ORTHO05D001787 4.3e-15 85.1 82 57.3
Duzib068G0729 Durio zibethinus HOM05D001791 ORTHO05D001787 7.3e-15 84.3 82 56.1
Potri.003G115700 Populus trichocarpa HOM05D001791 ORTHO05D001787 7.3e-15 84.3 82 56.1
Sabra01G0089800 Salix brachista HOM05D001791 ORTHO05D001787 7.3e-15 84.3 82 57.3
Gohir.D08G192700 Gossypium hirsutum HOM05D001791 ORTHO05D001787 9.6e-15 84.0 82 56.1
MELO3C013989.2 Cucumis melo HOM05D001791 ORTHO05D001787 1.3e-14 83.6 74 63.5
CsaV3_3G003230 Cucumis sativus L. HOM05D001791 ORTHO05D001787 1.3e-14 83.6 74 63.5
Cpa.g.sc29.85 Carica papaya HOM05D001791 ORTHO05D001787 1.6e-14 83.2 75 58.7
ClCG10G003190 Citrullus lanatus HOM05D001791 ORTHO05D001787 1.6e-14 83.2 74 64.9
QL08p053426 Quercus lobata HOM05D001791 ORTHO05D001787 1.6e-14 83.2 81 54.3
Glyma.05G241700 Glycine max HOM05D001791 ORTHO05D001787 2.1e-14 82.8 75 56.0
C02p44320 Brassica napus HOM05D001791 ORTHO05D024528 3.6e-14 82.0 84 57.1
COL.COLO4_23873 Corchorus olitorius HOM05D001791 ORTHO05D001787 3.6e-14 82.0 87 52.9
TAR375G0535 Trochodendron aralioides HOM05D001791 ORTHO05D001787 3.6e-14 82.0 80 55.0
Dinv39074 Davidia involucrata HOM05D001791 ORTHO05D001787 4.8e-14 81.6 73 60.3
Eucgr.D01987 Eucalyptus grandis HOM05D001791 ORTHO05D001787 6.2e-14 81.3 76 56.6
HanXRQChr17g0550411 Helianthus annuus HOM05D001791 ORTHO05D001787 6.2e-14 81.3 72 58.3
Manes.01G073000 Manihot esculenta HOM05D001791 ORTHO05D001787 6.2e-14 81.3 74 56.8
Haze_09048 Corylus avellana HOM05D001791 ORTHO05D001787 8.1e-14 80.9 69 62.3
TAR374G0056 Trochodendron aralioides HOM05D001791 ORTHO05D001787 8.1e-14 80.9 76 56.6
Ciclev10019946m.g Citrus clementina HOM05D001791 ORTHO05D001787 1.1e-13 80.5 82 56.1
Gorai.004G202300 Gossypium raimondii HOM05D001791 ORTHO05D001787 1.1e-13 80.5 82 54.9
arahy.Tifrunner.gnm1.ann1.03CHBD Arachis hypogaea HOM05D001791 ORTHO05D001787 1.4e-13 80.1 70 60.0
arahy.Tifrunner.gnm1.ann1.240DSL Arachis hypogaea HOM05D001791 ORTHO05D001787 1.4e-13 80.1 70 60.0
Ca_17240_v3 Cicer arietinum L. HOM05D001791 ORTHO05D001787 1.4e-13 80.1 78 55.1
ECA246G0683 Erigeron canadensis HOM05D001791 ORTHO05D001787 1.4e-13 80.1 69 58.0
Glyma.08G049200 Glycine max HOM05D001791 ORTHO05D001787 1.4e-13 80.1 75 57.3
Lsat_1_v5_gn_3_3741 Lactuca sativa HOM05D001791 ORTHO05D001787 1.4e-13 80.1 71 59.2
CiPaw.11G147200 Carya illinoinensis HOM05D001791 ORTHO05D001787 1.8e-13 79.7 81 54.3
ClCG01G003620 Citrullus lanatus HOM05D001791 ORTHO05D001787 1.8e-13 79.7 77 58.4
Medtr8g106210 Medicago truncatula HOM05D001791 ORTHO05D001787 1.8e-13 79.7 75 60.0
Potri.001G117000 Populus trichocarpa HOM05D001791 ORTHO05D001787 1.8e-13 79.7 82 54.9
Cfa012020 Carpinus fangiana HOM05D001791 ORTHO05D001787 2.4e-13 79.3 69 60.9
Sopen08g027880 Solanum pennellii HOM05D001791 ORTHO05D001787 2.4e-13 79.3 79 58.2
Atru.chr9.1437 Acer truncatum HOM05D001791 ORTHO05D001787 3.1e-13 79.0 84 53.6
CSS0019690 Camellia sinensis var. sinensis HOM05D001791 ORTHO05D001787 3.1e-13 79.0 75 56.0
TPR.G12740 Trifolium pratense HOM05D001791 ORTHO05D001787 3.1e-13 79.0 77 55.8
Sc01g0009200 Simmondsia chinensis HOM05D001791 ORTHO05D001787 4.0e-13 78.6 83 53.0
CAN.G630.78 Capsicum annuum HOM05D001791 ORTHO05D001787 5.3e-13 78.2 78 57.7
Lj2P208T15 Lonicera japonica HOM05D001791 ORTHO05D001787 5.3e-13 78.2 94 50.0
Peaxi162Scf00271g00128 Petunia axillaris HOM05D001791 ORTHO05D001787 5.3e-13 78.2 82 56.1
TWI60G0377 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 5.3e-13 78.2 69 59.4
MSTRG.25551 Avicennia marina HOM05D001791 ORTHO05D001787 6.9e-13 77.8 89 52.8
Lalb_Chr05g0222021 Lupinus albus HOM05D001791 ORTHO05D001787 6.9e-13 77.8 72 56.9
Phvul.002G325000 Phaseolus vulgaris HOM05D001791 ORTHO05D001787 6.9e-13 77.8 77 55.8
MELO3C005583.2 Cucumis melo HOM05D001791 ORTHO05D001787 9.0e-13 77.4 77 57.1
CsaV3_5G003720 Cucumis sativus L. HOM05D001791 ORTHO05D001787 9.0e-13 77.4 77 57.1
Cc08_g13270 Coffea canephora HOM05D001791 ORTHO05D001787 1.2e-12 77.0 70 61.4
Solyc08g079510.3 Solanum lycopersicum HOM05D001791 ORTHO05D001787 1.2e-12 77.0 79 55.7
FAN04G2441 Fragaria x ananassa HOM05D001791 ORTHO05D001787 1.5e-12 76.6 81 53.1
FAN13G0899 Fragaria x ananassa HOM05D001791 ORTHO05D001787 1.5e-12 76.6 81 53.1
PGSC0003DMG400003956 Solanum tuberosum HOM05D001791 ORTHO05D001787 1.5e-12 76.6 77 55.8
VMungo0606G0001 Vigna mungo HOM05D001791 ORTHO05D001787 1.5e-12 76.6 76 55.3
FvH4_5g00760 Fragaria vesca HOM05D001791 ORTHO05D001787 2.0e-12 76.3 81 53.1
FAN18G0073 Fragaria x ananassa HOM05D001791 ORTHO05D001787 2.0e-12 76.3 81 53.1
SalBow6G1467 Salvia bowleyana HOM05D001791 ORTHO05D001787 2.0e-12 76.3 87 50.6
Hund11563 Selenicereus undatus HOM05D001791 ORTHO05D001787 2.0e-12 76.3 101 47.5
AUR62017387 Chenopodium quinoa HOM05D001791 ORTHO05D001787 2.6e-12 75.9 105 44.8
MD04G1079100 Malus domestica HOM05D001791 ORTHO05D001787 2.6e-12 75.9 86 53.5
Ah.02g116210 Amaranthus hybridus HOM05D001791 ORTHO05D001787 3.4e-12 75.5 111 47.7
Lalb_Chr16g0387351 Lupinus albus HOM05D001791 ORTHO05D001787 4.4e-12 75.1 72 55.6
Duzib084G1358 Durio zibethinus HOM05D001791 ORTHO05D001787 5.8e-12 74.7 101 43.6
Nn4g26382 Nelumbo nucifera HOM05D001791 ORTHO05D001787 5.8e-12 74.7 83 51.8
HanXRQChr06g0164641 Helianthus annuus HOM05D001791 ORTHO05D001787 7.6e-12 74.3 72 52.8
RcHm_v2.0_Chr7g0201471 Rosa chinensis HOM05D001791 ORTHO05D001787 7.6e-12 74.3 82 47.6
TWI81G0909 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 7.6e-12 74.3 76 52.6
EL10Ac5g12619 Beta vulgaris HOM05D001791 ORTHO05D001787 9.9e-12 73.9 70 54.3
Psat7g003800 Pisum sativum HOM05D001791 ORTHO05D001787 9.9e-12 73.9 86 47.7
vmacro14039 Vaccinium macrocarpon HOM05D001791 ORTHO05D001787 9.9e-12 73.9 76 51.3
AUR62010515 Chenopodium quinoa HOM05D001791 ORTHO05D001787 1.3e-11 73.6 103 43.7
Sed0023887 Sechium edule HOM05D001791 ORTHO05D001787 1.3e-11 73.6 78 55.1
DCAR_000857 Daucus carota HOM05D001791 ORTHO05D001787 1.7e-11 73.2 79 45.6
Nitab4.5_0003534g0030 Nicotiana tabacum HOM05D001791 ORTHO05D001787 1.7e-11 73.2 79 54.4
Nitab4.5_0010237g0050 Nicotiana tabacum HOM05D001791 ORTHO05D001787 1.7e-11 73.2 79 54.4
Ah.12g058180 Amaranthus hybridus HOM05D001791 ORTHO05D001787 2.2e-11 72.8 86 47.7
Migut.A00838 Erythranthe guttata HOM05D001791 ORTHO05D001787 2.2e-11 72.8 89 49.4
CANSAT21G0380 Cannabis sativa HOM05D001791 ORTHO05D001787 3.8e-11 72.0 85 49.4
Dinv37760 Davidia involucrata HOM05D001791 ORTHO05D001787 6.4e-11 71.2 69 58.0
BolC3t13068H Brassica oleracea HOM05D001791 ORTHO05D024528 8.4e-11 70.9 83 54.2
Oeu016506.1 Olea europaea HOM05D001791 ORTHO05D001787 8.4e-11 70.9 85 49.4
CiPaw.12G104500 Carya illinoinensis HOM05D001791 ORTHO05D001787 1.1e-10 70.5 87 47.1
DCAR_005649 Daucus carota HOM05D001791 ORTHO05D001787 1.1e-10 70.5 83 44.6
PGR042G3389 Punica granatum HOM05D001791 ORTHO05D001787 1.4e-10 70.1 110 42.7
unitig_22.g5482 Utricularia gibba HOM05D001791 ORTHO05D001787 1.9e-10 69.7 79 51.9
Rhsim07G0101100 Rhododendron simsii HOM05D001791 ORTHO05D001787 5.4e-10 68.2 79 46.8
SGA_v2.0_scaffold120G32810 Striga asiatica HOM05D001791 ORTHO05D001787 7.1e-10 67.8 86 46.5
Aqoxy7G00640 Aquilegia oxysepala HOM05D001791 ORTHO05D001787 9.3e-10 67.4 84 48.8
unitig_21.g20532 Utricularia gibba HOM05D001791 ORTHO05D001787 9.3e-10 67.4 72 50.0
unitig_8.g3901 Utricularia gibba HOM05D001791 ORTHO05D001787 7.8e-09 64.3 82 47.6
PSO782G2332 Papaver somniferum HOM05D001791 ORTHO05D001787 1.0e-08 63.9 91 44.0
Nn1g01251 Nelumbo nucifera HOM05D001791 ORTHO05D001787 2.3e-08 62.8 81 46.9
CSS0003253 Camellia sinensis var. sinensis HOM05D001791 ORTHO05D001787 3.0e-08 62.4 69 46.4
PSO478G5243 Papaver somniferum HOM05D001791 ORTHO05D001787 3.0e-08 62.4 88 44.3
MBI12_g34012_MAGBIO Magnolia biondii HOM05D001791 ORTHO05D001787 3.9e-08 62.0 73 46.6
Prupe.5G080100 Prunus persica HOM05D001791 ORTHO05D001787 8.7e-08 60.8 77 48.1
Nn1g01115 Nelumbo nucifera HOM05D001791 ORTHO05D001787 2.5e-07 59.3 83 43.4
Hma1.2p1_0138F.1_g063140 Hydrangea macrophylla HOM05D001791 ORTHO05D001787 4.3e-07 58.5 81 43.2
PGR031G3235 Punica granatum HOM05D001791 ORTHO05D001787 5.6e-07 58.2 119 32.8
unitig_744.g24321 Utricularia gibba HOM05D001791 ORTHO05D001787 5.6e-07 58.2 72 47.2
Sed0006466 Sechium edule HOM05D001791 ORTHO05D001787 1.3e-06 57.0 69 49.3
CDE02G4690 Ceratophyllum demersum HOM05D001791 ORTHO05D001787 4.8e-06 55.1 73 45.2
GSVIVG01004907001 Vitis vinifera HOM05D001791 ORTHO05D001787 8.1e-06 54.3 29 79.3


User provided reference genes

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