Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 0.0e+00 1393.3 721 100.0
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 0.0e+00 1387.5 725 99.4
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 0.0e+00 1204.5 750 87.2
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 0.0e+00 1169.5 750 85.6
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 0.0e+00 1136.3 761 82.5
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.6e-252 876.3 791 67.5
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 9.7e-226 787.3 798 63.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.0e-218 763.1 779 60.7
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.5e-210 736.9 806 60.7
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.4e-200 703.7 802 58.1
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 2.3e-190 669.8 761 58.3
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.1e-183 646.7 734 59.4
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 8.1e-180 634.8 887 50.4
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 2.9e-177 626.3 761 56.8
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.2e-175 620.9 761 56.6
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.0e-174 617.8 758 56.6
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.1e-171 607.8 752 55.2
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.0e-130 470.7 788 45.8
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.7e-81 308.1 857 36.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.3e-25 122.5 747 24.5
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.0e-20 106.3 614 24.8
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 6.5e-20 103.6 124 46.0
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 6.5e-20 103.6 124 46.0
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.4e-19 102.4 131 43.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.4e-19 102.4 280 32.5
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.9e-19 102.1 908 23.6
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-19 102.1 122 45.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.2e-19 100.9 880 23.4
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-18 99.4 204 33.3
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.1e-18 98.6 939 22.9
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 7.9e-18 96.7 121 43.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.3e-17 95.9 128 45.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.9e-17 94.4 966 24.2
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 3.9e-17 94.4 156 39.1
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 5.1e-17 94.0 119 43.7
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 6.7e-17 93.6 129 41.1
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.8e-17 93.2 121 43.8
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.1e-16 92.8 98 49.0
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.5e-16 91.7 97 47.4
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.3e-16 91.3 127 40.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.3e-16 91.3 121 43.8
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.3e-15 89.4 121 43.0
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-15 89.4 883 23.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.7e-15 89.0 388 26.5
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.8e-15 88.2 127 40.9
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.8e-15 88.2 240 31.7
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.8e-15 88.2 99 45.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.8e-15 88.2 78 55.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 3.7e-15 87.8 119 41.2
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 4.8e-15 87.4 127 41.7
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 4.8e-15 87.4 307 28.3
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 6.3e-15 87.0 136 39.0
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 6.3e-15 87.0 614 23.8
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.1e-14 86.3 127 40.2
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-14 85.9 104 43.3
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.4e-14 85.9 362 27.6
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.8e-14 85.5 568 23.6
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.8e-14 85.5 125 37.6
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.4e-14 85.1 99 45.5
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.1e-14 84.7 192 31.8
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 4.1e-14 84.3 119 44.5
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.1e-14 84.3 147 39.5
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 5.3e-14 84.0 133 42.9
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 5.3e-14 84.0 122 40.2
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.5e-13 82.4 499 24.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.0e-13 82.0 903 23.4
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.0e-13 82.0 897 22.2
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.0e-13 82.0 168 30.4
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 3.4e-13 81.3 188 34.6
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.4e-13 81.3 419 27.0
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.5e-13 80.9 120 43.3
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.5e-13 80.9 125 39.2
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 5.9e-13 80.5 245 31.4
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.9e-13 80.5 129 39.5
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 7.7e-13 80.1 92 41.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 7.7e-13 80.1 57 61.4
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 7.7e-13 80.1 119 42.0
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-12 79.7 965 22.5
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.0e-12 79.7 125 37.6
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.3e-12 79.3 167 35.9
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.7e-12 79.0 127 40.2
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 2.2e-12 78.6 127 40.2
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 3.8e-12 77.8 108 40.7
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.0e-12 77.4 80 45.0
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 5.0e-12 77.4 115 39.1
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.1e-11 76.3 140 40.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.1e-11 76.3 95 44.2
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.1e-11 76.3 99 40.4
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.1e-11 76.3 99 40.4
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-11 75.9 75 50.7
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.4e-11 75.9 140 40.0
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.9e-11 75.5 807 25.0
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.9e-11 75.5 218 30.7
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 2.5e-11 75.1 147 36.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.5e-11 75.1 109 42.2
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 3.2e-11 74.7 74 50.0
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 4.2e-11 74.3 203 29.1
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 5.5e-11 73.9 427 26.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 7.2e-11 73.6 473 26.2
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 2.1e-10 72.0 81 46.9
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.6e-10 71.2 116 40.5
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.6e-10 71.2 209 30.1
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.7e-10 70.9 771 24.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.7e-10 70.9 106 39.6
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 6.1e-10 70.5 172 32.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.0e-09 69.7 116 38.8
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.0e-09 69.7 102 33.3
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.4e-09 69.3 657 24.2
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.4e-09 69.3 500 24.6
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.3e-09 68.6 114 37.7
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 3.0e-09 68.2 364 23.4
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 3.0e-09 68.2 61 49.2
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.9e-09 67.8 37 70.3
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.9e-09 67.8 117 37.6
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 8.8e-09 66.6 539 23.7
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 8.8e-09 66.6 107 36.4
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-08 66.2 132 34.8
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.1e-08 66.2 225 28.0
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.1e-08 66.2 104 37.5
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.6e-08 65.1 366 27.0
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 2.6e-08 65.1 39 61.5
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.3e-08 64.7 367 27.8
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.3e-08 64.7 99 42.4
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 5.7e-08 63.9 688 21.7
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 5.7e-08 63.9 41 61.0
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 9.7e-08 63.2 113 38.9
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 1.3e-07 62.8 69 43.5
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 4.8e-07 60.8 31 71.0
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.1e-06 59.7 111 31.5
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.8e-06 58.9 60 48.3
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.4e-06 58.5 120 35.0
AagrBONN_evm.TU.Sc2ySwM_344.2400 Anthoceros agrestis HOM05D010750 ORTHO05D005686 3.1e-06 58.2 44 59.1
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.1e-06 57.8 485 24.3
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 4.1e-06 57.8 872 20.5


User provided reference genes

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